Holmes EC - Search Results

1

Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy.

Di Giallonardo F, Duchene S, Puglia I, Curini V, Profeta F, Cammà C, Marcacci M, Calistri P, Holmes EC, Lorusso A. Di Giallonardo F, et al. Among authors: holmes ec. Viruses. 2020 Dec 14;12(12):1438. doi: 10.3390/v12121438. Viruses. 2020. PMID: 33327566 Free PMC article.

2

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

Duchêne S, Holmes EC, Ho SY. Duchêne S, et al. Among authors: holmes ec. Proc Biol Sci. 2014 Jul 7;281(1786):20140732. doi: 10.1098/rspb.2014.0732. Proc Biol Sci. 2014. PMID: 24850916 Free PMC article.

3

Viral biocontrol: grand experiments in disease emergence and evolution.

Di Giallonardo F, Holmes EC. Di Giallonardo F, et al. Among authors: holmes ec. Trends Microbiol. 2015 Feb;23(2):83-90. doi: 10.1016/j.tim.2014.10.004. Epub 2014 Oct 31. Trends Microbiol. 2015. PMID: 25455418 Free PMC article. Review.

4

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data.

Duchêne S, Duchêne D, Holmes EC, Ho SY. Duchêne S, et al. Among authors: holmes ec. Mol Biol Evol. 2015 Jul;32(7):1895-906. doi: 10.1093/molbev/msv056. Epub 2015 Mar 13. Mol Biol Evol. 2015. PMID: 25771196

5

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models.

Duchêne S, Ho SY, Holmes EC. Duchêne S, et al. Among authors: holmes ec. BMC Evol Biol. 2015 Mar 11;15:36. doi: 10.1186/s12862-015-0312-6. BMC Evol Biol. 2015. PMID: 25886870 Free PMC article.

6

Exploring Host-Pathogen Interactions through Biological Control.

Di Giallonardo F, Holmes EC. Di Giallonardo F, et al. Among authors: holmes ec. PLoS Pathog. 2015 Jun 25;11(6):e1004865. doi: 10.1371/journal.ppat.1004865. eCollection 2015 Jun. PLoS Pathog. 2015. PMID: 26110272 Free PMC article. Review. No abstract available.

7

Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations.

Duchêne DA, Duchêne S, Holmes EC, Ho SY. Duchêne DA, et al. Among authors: holmes ec. Mol Biol Evol. 2015 Nov;32(11):2986-95. doi: 10.1093/molbev/msv154. Epub 2015 Jul 10. Mol Biol Evol. 2015. PMID: 26163668 Free PMC article.

8

Substitution Model Adequacy and Assessing the Reliability of Estimates of Virus Evolutionary Rates and Time Scales.

Duchêne S, Di Giallonardo F, Holmes EC. Duchêne S, et al. Among authors: holmes ec. Mol Biol Evol. 2016 Jan;33(1):255-67. doi: 10.1093/molbev/msv207. Epub 2015 Sep 28. Mol Biol Evol. 2016. PMID: 26416981

9

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment.

Di Giallonardo F, Geoghegan JL, Docherty DE, McLean RG, Zody MC, Qu J, Yang X, Birren BW, Malboeuf CM, Newman RM, Ip HS, Holmes EC. Di Giallonardo F, et al. Among authors: holmes ec. J Virol. 2015 Oct 28;90(2):862-72. doi: 10.1128/JVI.02305-15. Print 2016 Jan 15. J Virol. 2015. PMID: 26512086 Free PMC article.

10

Virological factors that increase the transmissibility of emerging human viruses.

Geoghegan JL, Senior AM, Di Giallonardo F, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4170-5. doi: 10.1073/pnas.1521582113. Epub 2016 Mar 21. Proc Natl Acad Sci U S A. 2016. PMID: 27001840 Free PMC article.

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