Liu K - Search Results

1

OCTAD: an open workspace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features.

Zeng B, Glicksberg BS, Newbury P, Chekalin E, Xing J, Liu K, Wen A, Chow C, Chen B. Zeng B, et al. Among authors: liu k. Nat Protoc. 2021 Feb;16(2):728-753. doi: 10.1038/s41596-020-00430-z. Epub 2020 Dec 23. Nat Protoc. 2021. PMID: 33361798 Free PMC article.

2

Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data.

Liu K, Newbury PA, Glicksberg BS, Zeng WZD, Paithankar S, Andrechek ER, Chen B. Liu K, et al. Nat Commun. 2019 May 15;10(1):2138. doi: 10.1038/s41467-019-10148-6. Nat Commun. 2019. PMID: 31092827 Free PMC article.

3

Sex differences in viral entry protein expression and host transcript responses to SARS-CoV-2.

Sun M, Shankar R, Ko M, Chang CD, Yeh SJ, Li S, Liu K, Zhou G, Xing J, VanVelsen A, VanVelsen T, Paithankar S, Feng BY, Young K, Strug M, Turco L, Wang Z, Schadt E, Chen R, Li X, Oskotsky T, Sirota M, Glicksberg BS, Nadkarni GN, Moeser AJ, Li L, Kim S, Zhou J, Chen B. Sun M, et al. Among authors: liu k. Res Sq [Preprint]. 2020 Dec 31:rs.3.rs-100914. doi: 10.21203/rs.3.rs-100914/v1. Res Sq. 2020. PMID: 33173861 Free PMC article. Preprint.

4

Gene expression signatures identify paediatric patients with multiple organ dysfunction who require advanced life support in the intensive care unit.

Shankar R, Leimanis ML, Newbury PA, Liu K, Xing J, Nedveck D, Kort EJ, Prokop JW, Zhou G, Bachmann AS, Chen B, Rajasekaran S. Shankar R, et al. Among authors: liu k. EBioMedicine. 2020 Dec;62:103122. doi: 10.1016/j.ebiom.2020.103122. Epub 2020 Nov 25. EBioMedicine. 2020. PMID: 33248372 Free PMC article.

5

Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals.

Xing J, Paithankar S, Liu K, Uhl K, Li X, Ko M, Kim S, Haskins J, Chen B. Xing J, et al. Among authors: liu k. bioRxiv [Preprint]. 2021 Mar 4:2021.03.04.433931. doi: 10.1101/2021.03.04.433931. bioRxiv. 2021. Update in: Brief Bioinform. 2021 Nov 5;22(6):bbab249. doi: 10.1093/bib/bbab249 PMID: 33688643 Free PMC article. Updated. Preprint.

6

Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals.

Xing J, Paithankar S, Liu K, Uhl K, Li X, Ko M, Kim S, Haskins J, Chen B. Xing J, et al. Among authors: liu k. Brief Bioinform. 2021 Nov 5;22(6):bbab249. doi: 10.1093/bib/bbab249. Brief Bioinform. 2021. PMID: 34245241 Free PMC article.

7

MetBERT: a generalizable and pre-trained deep learning model for the prediction of metastatic cancer from clinical notes.

Liu K, Kulkarni O, Witteveen-Lane M, Chen B, Chesla D. Liu K, et al. AMIA Jt Summits Transl Sci Proc. 2022 May 23;2022:331-338. eCollection 2022. AMIA Jt Summits Transl Sci Proc. 2022. PMID: 35854741 Free PMC article.

8

BGLM: big data-guided LOINC mapping with multi-language support.

Liu K, Witteveen-Lane M, Glicksberg BS, Kulkarni O, Shankar R, Chekalin E, Paithankar S, Yang J, Chesla D, Chen B. Liu K, et al. JAMIA Open. 2022 Nov 25;5(4):ooac099. doi: 10.1093/jamiaopen/ooac099. eCollection 2022 Dec. JAMIA Open. 2022. PMID: 36448022 Free PMC article.

9

Tumor removal limits prostate cancer cell dissemination in bone and osteoblasts induce cancer cell dormancy through focal adhesion kinase.

Liu R, Su S, Xing J, Liu K, Zhao Y, Stangis M, Jacho DP, Yildirim-Ayan ED, Gatto-Weis CM, Chen B, Li X. Liu R, et al. Among authors: liu k. J Exp Clin Cancer Res. 2023 Oct 11;42(1):264. doi: 10.1186/s13046-023-02849-0. J Exp Clin Cancer Res. 2023. PMID: 37821954 Free PMC article.

10

TransCell: In Silico Characterization of Genomic Landscape and Cellular Responses by Deep Transfer Learning.

Yeh SJ, Paithankar S, Chen R, Xing J, Sun M, Liu K, Zhou J, Chen B. Yeh SJ, et al. Among authors: liu k. Genomics Proteomics Bioinformatics. 2024 Jul 3;22(2):qzad008. doi: 10.1093/gpbjnl/qzad008. Genomics Proteomics Bioinformatics. 2024. PMID: 39240541 Free PMC article.

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