Rattei T - Search Results

1

DeepNOG: fast and accurate protein orthologous group assignment.

Feldbauer R, Gosch L, Lüftinger L, Hyden P, Flexer A, Rattei T. Feldbauer R, et al. Among authors: rattei t. Bioinformatics. 2021 Apr 1;36(22-23):5304-5312. doi: 10.1093/bioinformatics/btaa1051. Bioinformatics. 2021. PMID: 33367584 Free PMC article.

2

Prediction of microbial phenotypes based on comparative genomics.

Feldbauer R, Schulz F, Horn M, Rattei T. Feldbauer R, et al. Among authors: rattei t. BMC Bioinformatics. 2015;16 Suppl 14(Suppl 14):S1. doi: 10.1186/1471-2105-16-S14-S1. Epub 2015 Oct 2. BMC Bioinformatics. 2015. PMID: 26451672 Free PMC article.

3

ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes.

Weinmaier T, Platzer A, Frank J, Hellinger HJ, Tischler P, Rattei T. Weinmaier T, et al. Among authors: rattei t. Bioinformatics. 2016 Nov 1;32(21):3327-3329. doi: 10.1093/bioinformatics/btw393. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378292

4

NVT: a fast and simple tool for the assessment of RNA-seq normalization strategies.

Eder T, Grebien F, Rattei T. Eder T, et al. Among authors: rattei t. Bioinformatics. 2016 Dec 1;32(23):3682-3684. doi: 10.1093/bioinformatics/btw521. Epub 2016 Aug 11. Bioinformatics. 2016. PMID: 27515738 Free PMC article.

5

Characterization of a community-acquired-MRSA USA300 isolate from a river sample in Austria and whole genome sequence based comparison to a diverse collection of USA300 isolates.

Lepuschitz S, Huhulescu S, Hyden P, Springer B, Rattei T, Allerberger F, Mach RL, Ruppitsch W. Lepuschitz S, et al. Among authors: rattei t. Sci Rep. 2018 Jun 21;8(1):9467. doi: 10.1038/s41598-018-27781-8. Sci Rep. 2018. PMID: 29930324 Free PMC article.

6

Learning From Limited Data: Towards Best Practice Techniques for Antimicrobial Resistance Prediction From Whole Genome Sequencing Data.

Lüftinger L, Májek P, Beisken S, Rattei T, Posch AE. Lüftinger L, et al. Among authors: rattei t. Front Cell Infect Microbiol. 2021 Feb 15;11:610348. doi: 10.3389/fcimb.2021.610348. eCollection 2021. Front Cell Infect Microbiol. 2021. PMID: 33659219 Free PMC article.

7

Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations.

Lüftinger L, Ferreira I, Frank BJH, Beisken S, Weinberger J, von Haeseler A, Rattei T, Hofstaetter JG, Posch AE, Materna A. Lüftinger L, et al. Among authors: rattei t. Biomedicines. 2021 Jul 29;9(8):910. doi: 10.3390/biomedicines9080910. Biomedicines. 2021. PMID: 34440114 Free PMC article. Review.

8

Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction.

Májek P, Lüftinger L, Beisken S, Rattei T, Materna A. Májek P, et al. Among authors: rattei t. Int J Mol Sci. 2021 Dec 2;22(23):13049. doi: 10.3390/ijms222313049. Int J Mol Sci. 2021. PMID: 34884852 Free PMC article.

9

Metagenomic Antimicrobial Susceptibility Testing from Simulated Native Patient Samples.

Lüftinger L, Májek P, Rattei T, Beisken S. Lüftinger L, et al. Among authors: rattei t. Antibiotics (Basel). 2023 Feb 9;12(2):366. doi: 10.3390/antibiotics12020366. Antibiotics (Basel). 2023. PMID: 36830277 Free PMC article.

10

Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information.

Tetko IV, Rodchenkov IV, Walter MC, Rattei T, Mewes HW. Tetko IV, et al. Among authors: rattei t. Bioinformatics. 2008 Mar 1;24(5):621-8. doi: 10.1093/bioinformatics/btm633. Epub 2008 Jan 3. Bioinformatics. 2008. PMID: 18174184

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