Kumar V - Search Results

1

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Chawla S, Samydurai S, Kong SL, Wu Z, Wang Z, Tam WL, Sengupta D, Kumar V. Chawla S, et al. Among authors: kumar v. Nucleic Acids Res. 2021 Feb 22;49(3):1801. doi: 10.1093/nar/gkab018. Nucleic Acids Res. 2021. PMID: 33450029 Free PMC article. No abstract available.

2

CellAtlasSearch: a scalable search engine for single cells.

Srivastava D, Iyer A, Kumar V, Sengupta D. Srivastava D, et al. Among authors: kumar v. Nucleic Acids Res. 2018 Jul 2;46(W1):W141-W147. doi: 10.1093/nar/gky421. Nucleic Acids Res. 2018. PMID: 29788498 Free PMC article.

3

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Chawla S, Samydurai S, Kong SL, Wu Z, Wang Z, Tam WL, Sengupta D, Kumar V. Chawla S, et al. Among authors: kumar v. Nucleic Acids Res. 2021 Feb 22;49(3):e13. doi: 10.1093/nar/gkaa1138. Nucleic Acids Res. 2021. PMID: 33275158 Free PMC article.

4

Associating pathways with diseases using single-cell expression profiles and making inferences about potential drugs.

Sharma M, Jha IP, Chawla S, Pandey N, Chandra O, Mishra S, Kumar V. Sharma M, et al. Among authors: kumar v. Brief Bioinform. 2022 Jul 18;23(4):bbac241. doi: 10.1093/bib/bbac241. Brief Bioinform. 2022. PMID: 35772850

5

Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis.

Mishra S, Pandey N, Chawla S, Sharma M, Chandra O, Jha IP, SenGupta D, Natarajan KN, Kumar V. Mishra S, et al. Among authors: kumar v. Genome Res. 2023 Feb;33(2):218-231. doi: 10.1101/gr.277015.122. Epub 2023 Jan 18. Genome Res. 2023. PMID: 36653120 Free PMC article.

6

Patterns of transcription factor binding and epigenome at promoters allow interpretable predictability of multiple functions of non-coding and coding genes.

Chandra O, Sharma M, Pandey N, Jha IP, Mishra S, Kong SL, Kumar V. Chandra O, et al. Among authors: kumar v. Comput Struct Biotechnol J. 2023 Jul 14;21:3590-3603. doi: 10.1016/j.csbj.2023.07.014. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37520281 Free PMC article.

7

Improving Chromatin-Interaction Prediction Using Single-Cell Open-Chromatin Profiles and Making Insight Into the Cis-Regulatory Landscape of the Human Brain.

Pandey N, Omkar Chandra, Mishra S, Kumar V. Pandey N, et al. Among authors: kumar v. Front Genet. 2021 Oct 8;12:738194. doi: 10.3389/fgene.2021.738194. eCollection 2021. Front Genet. 2021. PMID: 34691152 Free PMC article.

8

FITs: forest of imputation trees for recovering true signals in single-cell open chromatin profiles.

Sharma R, Pandey N, Mongia A, Mishra S, Majumdar A, Kumar V. Sharma R, et al. Among authors: kumar v. NAR Genom Bioinform. 2020 Nov 19;2(4):lqaa091. doi: 10.1093/nargab/lqaa091. eCollection 2020 Dec. NAR Genom Bioinform. 2020. PMID: 33575635 Free PMC article.

9

Longitudinal single-cell RNA sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy.

Sharma A, Cao EY, Kumar V, Zhang X, Leong HS, Wong AML, Ramakrishnan N, Hakimullah M, Teo HMV, Chong FT, Chia S, Thangavelu MT, Kwang XL, Gupta R, Clark JR, Periyasamy G, Iyer NG, DasGupta R. Sharma A, et al. Among authors: kumar v. Nat Commun. 2018 Nov 22;9(1):4931. doi: 10.1038/s41467-018-07261-3. Nat Commun. 2018. PMID: 30467425 Free PMC article.

10

Computational challenges in detection of cancer using cell-free DNA methylation.

Sharma M, Verma RK, Kumar S, Kumar V. Sharma M, et al. Among authors: kumar v, kumar s. Comput Struct Biotechnol J. 2021 Dec 7;20:26-39. doi: 10.1016/j.csbj.2021.12.001. eCollection 2022. Comput Struct Biotechnol J. 2021. PMID: 34976309 Free PMC article. Review.

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