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Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.
Crits-Christoph A, Kantor RS, Olm MR, Whitney ON, Al-Shayeb B, Lou YC, Flamholz A, Kennedy LC, Greenwald H, Hinkle A, Hetzel J, Spitzer S, Koble J, Tan A, Hyde F, Schroth G, Kuersten S, Banfield JF, Nelson KL. Crits-Christoph A, et al. Among authors: flamholz a. mBio. 2021 Jan 19;12(1):e02703-20. doi: 10.1128/mBio.02703-20. mBio. 2021. PMID: 33468686 Free PMC article.
A map of the rubisco biochemical landscape.
Prywes N, Philips NR, Oltrogge LM, Lindner S, Candace Tsai YC, de Pins B, Cowan AE, Taylor-Kearney LJ, Chang HA, Hall LN, Bellieny-Rabelo D, Nisonoff HM, Weissman RF, Flamholz AI, Ding D, Bhatt AY, Shih PM, Mueller-Cajar O, Milo R, Savage DF. Prywes N, et al. Among authors: flamholz ai. bioRxiv [Preprint]. 2024 Apr 11:2023.09.27.559826. doi: 10.1101/2023.09.27.559826. bioRxiv. 2024. PMID: 38645011 Free PMC article. Preprint.
Closed ecosystems extract energy through self-organized nutrient cycles.
Goyal A, Flamholz AI, Petroff AP, Murugan A. Goyal A, et al. Among authors: flamholz ai. Proc Natl Acad Sci U S A. 2023 Dec 26;120(52):e2309387120. doi: 10.1073/pnas.2309387120. Epub 2023 Dec 21. Proc Natl Acad Sci U S A. 2023. PMID: 38127977 Free PMC article.
SARS-CoV-2 (COVID-19) by the numbers.
Bar-On YM, Flamholz A, Phillips R, Milo R. Bar-On YM, et al. Among authors: flamholz a. Elife. 2020 Apr 2;9:e57309. doi: 10.7554/eLife.57309. Elife. 2020. PMID: 32228860 Free PMC article.
The total number and mass of SARS-CoV-2 virions.
Sender R, Bar-On YM, Gleizer S, Bernshtein B, Flamholz A, Phillips R, Milo R. Sender R, et al. Among authors: flamholz a. Proc Natl Acad Sci U S A. 2021 Jun 22;118(25):e2024815118. doi: 10.1073/pnas.2024815118. Proc Natl Acad Sci U S A. 2021. PMID: 34083352 Free PMC article.
Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area.
Greenwald HD, Kennedy LC, Hinkle A, Whitney ON, Fan VB, Crits-Christoph A, Harris-Lovett S, Flamholz AI, Al-Shayeb B, Liao LD, Beyers M, Brown D, Chakrabarti AR, Dow J, Frost D, Koekemoer M, Lynch C, Sarkar P, White E, Kantor R, Nelson KL. Greenwald HD, et al. Among authors: flamholz ai. Water Res X. 2021 Aug 1;12:100111. doi: 10.1016/j.wroa.2021.100111. Epub 2021 Jul 31. Water Res X. 2021. PMID: 34373850 Free PMC article.
Hydrophobicity and charge shape cellular metabolite concentrations.
Bar-Even A, Noor E, Flamholz A, Buescher JM, Milo R. Bar-Even A, et al. Among authors: flamholz a. PLoS Comput Biol. 2011 Oct;7(10):e1002166. doi: 10.1371/journal.pcbi.1002166. Epub 2011 Oct 6. PLoS Comput Biol. 2011. PMID: 21998563 Free PMC article. Review.
eQuilibrator--the biochemical thermodynamics calculator.
Flamholz A, Noor E, Bar-Even A, Milo R. Flamholz A, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D770-5. doi: 10.1093/nar/gkr874. Epub 2011 Nov 7. Nucleic Acids Res. 2012. PMID: 22064852 Free PMC article.
46 results