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A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood.
Ng DL, Granados AC, Santos YA, Servellita V, Goldgof GM, Meydan C, Sotomayor-Gonzalez A, Levine AG, Balcerek J, Han LM, Akagi N, Truong K, Neumann NM, Nguyen DN, Bapat SP, Cheng J, Martin CS, Federman S, Foox J, Gopez A, Li T, Chan R, Chu CS, Wabl CA, Gliwa AS, Reyes K, Pan CY, Guevara H, Wadford D, Miller S, Mason CE, Chiu CY. Ng DL, et al. Among authors: mason ce. Sci Adv. 2021 Feb 3;7(6):eabe5984. doi: 10.1126/sciadv.abe5984. Print 2021 Feb. Sci Adv. 2021. PMID: 33536218 Free PMC article.
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Among authors: mason ce. Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Genome Biol. 2017. PMID: 28934964 Free PMC article.
Nanopore DNA Sequencing and Genome Assembly on the International Space Station.
Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, Stryke D, Somasekar S, Alexander N, Yu G, Mason CE, Burton AS. Castro-Wallace SL, et al. Among authors: mason ce. Sci Rep. 2017 Dec 21;7(1):18022. doi: 10.1038/s41598-017-18364-0. Sci Rep. 2017. PMID: 29269933 Free PMC article.
Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.
Butler DJ, Mozsary C, Meydan C, Danko D, Foox J, Rosiene J, Shaiber A, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, Ramlall V, Westover CD, Ryon K, Young B, Bhattacharya C, Ruggiero P, Langhorst BW, Tanner N, Gawrys J, Meleshko D, Xu D, Steel PAD, Shemesh AJ, Xiang J, Thierry-Mieg J, Thierry-Mieg D, Schwartz RE, Iftner A, Bezdan D, Sipley J, Cong L, Craney A, Velu P, Melnick AM, Hajirasouliha I, Horner SM, Iftner T, Salvatore M, Loda M, Westblade LF, Cushing M, Levy S, Wu S, Tatonetti N, Imielinski M, Rennert H, Mason CE. Butler DJ, et al. Among authors: mason ce. bioRxiv [Preprint]. 2020 May 1:2020.04.20.048066. doi: 10.1101/2020.04.20.048066. bioRxiv. 2020. Update in: Nat Commun. 2021 Mar 12;12(1):1660. doi: 10.1038/s41467-021-21361-7 PMID: 32511352 Free PMC article. Updated. Preprint.
Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome.
Ramlall V, Thangaraj PM, Meydan C, Foox J, Butler D, May B, De Freitas JK, Glicksberg BS, Mason CE, Tatonetti NP, Shapira SD. Ramlall V, et al. Among authors: mason ce. medRxiv [Preprint]. 2020 Jun 6:2020.05.05.20092452. doi: 10.1101/2020.05.05.20092452. medRxiv. 2020. Update in: Nat Med. 2020 Oct;26(10):1609-1615. doi: 10.1038/s41591-020-1021-2 PMID: 32511494 Free PMC article. Updated. Preprint.
417 results