Cheng J - Search Results

1

Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction.

Chen C, Wu T, Guo Z, Cheng J. Chen C, et al. Among authors: cheng j. Proteins. 2021 Jun;89(6):697-707. doi: 10.1002/prot.26052. Epub 2021 Feb 16. Proteins. 2021. PMID: 33538038 Free PMC article.

2

Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching.

Cheng J, Saigo H, Baldi P. Cheng J, et al. Proteins. 2006 Mar 15;62(3):617-29. doi: 10.1002/prot.20787. Proteins. 2006. PMID: 16320312

3

Prediction of protein stability changes for single-site mutations using support vector machines.

Cheng J, Randall A, Baldi P. Cheng J, et al. Proteins. 2006 Mar 1;62(4):1125-32. doi: 10.1002/prot.20810. Proteins. 2006. PMID: 16372356

4

Assessment of predictions submitted for the CASP7 domain prediction category.

Tress M, Cheng J, Baldi P, Joo K, Lee J, Seo JH, Lee J, Baker D, Chivian D, Kim D, Ezkurdia I. Tress M, et al. Among authors: cheng j. Proteins. 2007;69 Suppl 8:137-51. doi: 10.1002/prot.21675. Proteins. 2007. PMID: 17680686

5

Evaluating the absolute quality of a single protein model using structural features and support vector machines.

Wang Z, Tegge AN, Cheng J. Wang Z, et al. Among authors: cheng j. Proteins. 2009 May 15;75(3):638-47. doi: 10.1002/prot.22275. Proteins. 2009. PMID: 19004001

6

Prediction of global and local quality of CASP8 models by MULTICOM series.

Cheng J, Wang Z, Tegge AN, Eickholt J. Cheng J, et al. Proteins. 2009;77 Suppl 9:181-4. doi: 10.1002/prot.22487. Proteins. 2009. PMID: 19544564

7

PreDisorder: ab initio sequence-based prediction of protein disordered regions.

Deng X, Eickholt J, Cheng J. Deng X, et al. Among authors: cheng j. BMC Bioinformatics. 2009 Dec 21;10:436. doi: 10.1186/1471-2105-10-436. BMC Bioinformatics. 2009. PMID: 20025768 Free PMC article.

8

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8.

Wang Z, Eickholt J, Cheng J. Wang Z, et al. Among authors: cheng j. Bioinformatics. 2010 Apr 1;26(7):882-8. doi: 10.1093/bioinformatics/btq058. Epub 2010 Feb 11. Bioinformatics. 2010. PMID: 20150411 Free PMC article.

9

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning.

Eickholt J, Deng X, Cheng J. Eickholt J, et al. Among authors: cheng j. BMC Bioinformatics. 2011 Feb 1;12:43. doi: 10.1186/1471-2105-12-43. BMC Bioinformatics. 2011. PMID: 21284866 Free PMC article.

10

A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny.

Wang Z, Zhang XC, Le MH, Xu D, Stacey G, Cheng J. Wang Z, et al. Among authors: cheng j. PLoS One. 2011 Mar 24;6(3):e17906. doi: 10.1371/journal.pone.0017906. PLoS One. 2011. PMID: 21455299 Free PMC article.

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