Nakagawa S - Search Results

1

Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer.

Ohno A, Umezawa K, Asai S, Kryukov K, Nakagawa S, Miyachi H, Imanishi T. Ohno A, et al. Among authors: nakagawa s. Sci Rep. 2021 Feb 9;11(1):3436. doi: 10.1038/s41598-021-82903-z. Sci Rep. 2021. PMID: 33564026 Free PMC article.

2

Multiple invasions of an infectious retrovirus in cat genomes.

Shimode S, Nakagawa S, Miyazawa T. Shimode S, et al. Among authors: nakagawa s. Sci Rep. 2015 Feb 2;5:8164. doi: 10.1038/srep08164. Sci Rep. 2015. PMID: 25641657 Free PMC article.

3

A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer.

Mitsuhashi S, Kryukov K, Nakagawa S, Takeuchi JS, Shiraishi Y, Asano K, Imanishi T. Mitsuhashi S, et al. Among authors: nakagawa s. Sci Rep. 2017 Jul 18;7(1):5657. doi: 10.1038/s41598-017-05772-5. Sci Rep. 2017. PMID: 28720805 Free PMC article.

4

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy.

Mitsuhashi S, Nakagawa S, Takahashi Ueda M, Imanishi T, Frith MC, Mitsuhashi H. Mitsuhashi S, et al. Among authors: nakagawa s. Sci Rep. 2017 Nov 1;7(1):14789. doi: 10.1038/s41598-017-13712-6. Sci Rep. 2017. PMID: 29093467 Free PMC article.

5

Systematic survey of non-retroviral virus-like elements in eukaryotic genomes.

Kryukov K, Ueda MT, Imanishi T, Nakagawa S. Kryukov K, et al. Among authors: nakagawa s. Virus Res. 2019 Mar;262:30-36. doi: 10.1016/j.virusres.2018.02.002. Epub 2018 Feb 6. Virus Res. 2019. PMID: 29425804

6

Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis.

Watanabe N, Kryukov K, Nakagawa S, Takeuchi JS, Takeshita M, Kirimura Y, Mitsuhashi S, Ishihara T, Aoki H, Inokuchi S, Imanishi T, Inoue S. Watanabe N, et al. Among authors: nakagawa s. PLoS One. 2018 Aug 15;13(8):e0202049. doi: 10.1371/journal.pone.0202049. eCollection 2018. PLoS One. 2018. PMID: 30110400 Free PMC article.

7

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences.

Kryukov K, Ueda MT, Nakagawa S, Imanishi T. Kryukov K, et al. Among authors: nakagawa s. Bioinformatics. 2019 Oct 1;35(19):3826-3828. doi: 10.1093/bioinformatics/btz144. Bioinformatics. 2019. PMID: 30799504 Free PMC article.

8

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer.

Kai S, Matsuo Y, Nakagawa S, Kryukov K, Matsukawa S, Tanaka H, Iwai T, Imanishi T, Hirota K. Kai S, et al. Among authors: nakagawa s. FEBS Open Bio. 2019 Jan 29;9(3):548-557. doi: 10.1002/2211-5463.12590. eCollection 2019 Mar. FEBS Open Bio. 2019. PMID: 30868063 Free PMC article.

9

Identification of a distinct lineage of aviadenovirus from crane feces.

Mukai Y, Tomita Y, Kryukov K, Nakagawa S, Ozawa M, Matsui T, Tomonaga K, Imanishi T, Kawaoka Y, Watanabe T, Horie M. Mukai Y, et al. Among authors: nakagawa s. Virus Genes. 2019 Dec;55(6):815-824. doi: 10.1007/s11262-019-01703-w. Epub 2019 Sep 23. Virus Genes. 2019. PMID: 31549291

10

Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study.

Asogawa M, Ohno A, Nakagawa S, Ochiai E, Katahira Y, Sudo M, Osawa M, Sugisawa M, Imanishi T. Asogawa M, et al. Among authors: nakagawa s. J Hum Genet. 2020 Jan;65(1):21-24. doi: 10.1038/s10038-019-0688-z. Epub 2019 Oct 24. J Hum Genet. 2020. PMID: 31649301

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