Joseph TA - Search Results

1

An Introduction to Whole-Metagenome Shotgun Sequencing Studies.

Joseph TA, Pe'er I. Joseph TA, et al. Methods Mol Biol. 2021;2243:107-122. doi: 10.1007/978-1-0716-1103-6_6. Methods Mol Biol. 2021. PMID: 33606255 Review.

2

FEAST: fast expectation-maximization for microbial source tracking.

Shenhav L, Thompson M, Joseph TA, Briscoe L, Furman O, Bogumil D, Mizrahi I, Pe'er I, Halperin E. Shenhav L, et al. Among authors: joseph ta. Nat Methods. 2019 Jul;16(7):627-632. doi: 10.1038/s41592-019-0431-x. Epub 2019 Jun 10. Nat Methods. 2019. PMID: 31182859 Free PMC article.

3

Efficient and Accurate Inference of Mixed Microbial Population Trajectories from Longitudinal Count Data.

Joseph TA, Pasarkar AP, Pe'er I. Joseph TA, et al. Cell Syst. 2020 Jun 24;10(6):463-469.e6. doi: 10.1016/j.cels.2020.05.006. Epub 2020 Jun 24. Cell Syst. 2020. PMID: 32684275 Free article.

4

Directional Gaussian Mixture Models of the Gut Microbiome Elucidate Microbial Spatial Structure.

Pasarkar AP, Joseph TA, Pe'er I. Pasarkar AP, et al. Among authors: joseph ta. mSystems. 2021 Dec 21;6(6):e0081721. doi: 10.1128/mSystems.00817-21. Epub 2021 Nov 9. mSystems. 2021. PMID: 34751587 Free PMC article.

5

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates.

Joseph TA, Chlenski P, Litman A, Korem T, Pe'er I. Joseph TA, et al. Genome Res. 2022 Mar;32(3):558-568. doi: 10.1101/gr.275533.121. Epub 2022 Jan 5. Genome Res. 2022. PMID: 34987055 Free PMC article.

6

Inference of Population Structure from Time-Series Genotype Data.

Joseph TA, Pe'er I. Joseph TA, et al. Am J Hum Genet. 2019 Aug 1;105(2):317-333. doi: 10.1016/j.ajhg.2019.06.002. Epub 2019 Jun 27. Am J Hum Genet. 2019. PMID: 31256878 Free PMC article.

7

Compositional Lotka-Volterra describes microbial dynamics in the simplex.

Joseph TA, Shenhav L, Xavier JB, Halperin E, Pe'er I. Joseph TA, et al. PLoS Comput Biol. 2020 May 29;16(5):e1007917. doi: 10.1371/journal.pcbi.1007917. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32469867 Free PMC article.

8

Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia.

Marcus JH, Posth C, Ringbauer H, Lai L, Skeates R, Sidore C, Beckett J, Furtwängler A, Olivieri A, Chiang CWK, Al-Asadi H, Dey K, Joseph TA, Liu CC, Der Sarkissian C, Radzevičiūtė R, Michel M, Gradoli MG, Marongiu P, Rubino S, Mazzarello V, Rovina D, La Fragola A, Serra RM, Bandiera P, Bianucci R, Pompianu E, Murgia C, Guirguis M, Orquin RP, Tuross N, van Dommelen P, Haak W, Reich D, Schlessinger D, Cucca F, Krause J, Novembre J. Marcus JH, et al. Among authors: joseph ta. Nat Commun. 2020 Feb 24;11(1):939. doi: 10.1038/s41467-020-14523-6. Nat Commun. 2020. PMID: 32094358 Free PMC article.

9

Demographic inference under a spatially continuous coalescent model.

Joseph TA, Hickerson MJ, Alvarado-Serrano DF. Joseph TA, et al. Heredity (Edinb). 2016 Aug;117(2):94-9. doi: 10.1038/hdy.2016.28. Epub 2016 Apr 27. Heredity (Edinb). 2016. PMID: 27118157 Free PMC article.

10

Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City.

Harris SE, Xue AT, Alvarado-Serrano D, Boehm JT, Joseph T, Hickerson MJ, Munshi-South J. Harris SE, et al. Biol Lett. 2016 Apr;12(4):20150983. doi: 10.1098/rsbl.2015.0983. Biol Lett. 2016. PMID: 27072402 Free PMC article.

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