Skutkova H - Search Results

1

Word Entropy-Based Approach to Detect Highly Variable Genetic Markers for Bacterial Genotyping.

Nykrynova M, Barton V, Sedlar K, Bezdicek M, Lengerova M, Skutkova H. Nykrynova M, et al. Among authors: skutkova h. Front Microbiol. 2021 Feb 3;12:631605. doi: 10.3389/fmicb.2021.631605. eCollection 2021. Front Microbiol. 2021. PMID: 33613503 Free PMC article.

2

Using deep learning for gene detection and classification in raw nanopore signals.

Nykrynova M, Jakubicek R, Barton V, Bezdicek M, Lengerova M, Skutkova H. Nykrynova M, et al. Among authors: skutkova h. Front Microbiol. 2022 Sep 15;13:942179. doi: 10.3389/fmicb.2022.942179. eCollection 2022. Front Microbiol. 2022. PMID: 36187947 Free PMC article.

3

Advanced DNA fingerprint genotyping based on a model developed from real chip electrophoresis data.

Skutkova H, Vitek M, Bezdicek M, Brhelova E, Lengerova M. Skutkova H, et al. J Adv Res. 2019 Jan 25;18:9-18. doi: 10.1016/j.jare.2019.01.005. eCollection 2019 Jul. J Adv Res. 2019. PMID: 30788173 Free PMC article.

4

CNproScan: Hybrid CNV detection for bacterial genomes.

Jugas R, Sedlar K, Vitek M, Nykrynova M, Barton V, Bezdicek M, Lengerova M, Skutkova H. Jugas R, et al. Among authors: skutkova h. Genomics. 2021 Sep;113(5):3103-3111. doi: 10.1016/j.ygeno.2021.06.040. Epub 2021 Jul 3. Genomics. 2021. PMID: 34224809 Free article.

5

Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms.

Bezdicek M, Nykrynova M, Sedlar K, Kralova S, Hanslikova J, Komprdova A, Skutkova H, Kocmanova I, Mayer J, Lengerova M. Bezdicek M, et al. Among authors: skutkova h. Sci Rep. 2021 Aug 16;11(1):16572. doi: 10.1038/s41598-021-96148-3. Sci Rep. 2021. PMID: 34400722 Free PMC article.

6

Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical Representations.

Maderankova D, Jugas R, Sedlar K, Vitek M, Skutkova H. Maderankova D, et al. Among authors: skutkova h. Comput Struct Biotechnol J. 2019 Jan 9;17:118-126. doi: 10.1016/j.csbj.2018.12.006. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 30728919 Free PMC article.

7

First Complete Genome of the Thermophilic Polyhydroxyalkanoates-Producing Bacterium Schlegelella thermodepolymerans DSM 15344.

Musilova J, Kourilova X, Bezdicek M, Lengerova M, Obruca S, Skutkova H, Sedlar K. Musilova J, et al. Among authors: skutkova h. Genome Biol Evol. 2021 Apr 3;13(4):evab007. doi: 10.1093/gbe/evab007. Genome Biol Evol. 2021. PMID: 33432323 Free PMC article.

8

A degeneration-reducing criterion for optimal digital mapping of genetic codes.

Skutkova H, Maderankova D, Sedlar K, Jugas R, Vitek M. Skutkova H, et al. Comput Struct Biotechnol J. 2019 Mar 19;17:406-414. doi: 10.1016/j.csbj.2019.03.007. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 30984363 Free PMC article.

9

Set of rules for genomic signal downsampling.

Sedlar K, Skutkova H, Vitek M, Provaznik I. Sedlar K, et al. Among authors: skutkova h. Comput Biol Med. 2016 Feb 1;69:308-14. doi: 10.1016/j.compbiomed.2015.05.022. Epub 2015 Jun 5. Comput Biol Med. 2016. PMID: 26078051 Free article.

10

Progressive alignment of genomic signals by multiple dynamic time warping.

Skutkova H, Vitek M, Sedlar K, Provaznik I. Skutkova H, et al. J Theor Biol. 2015 Nov 21;385:20-30. doi: 10.1016/j.jtbi.2015.08.007. Epub 2015 Aug 20. J Theor Biol. 2015. PMID: 26300069 Free article.

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