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Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: kendall m. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
Ortiz AT, Kendall M, Storey N, Hatcher J, Dunn H, Roy S, Williams R, Williams C, Goldstein RA, Didelot X, Harris K, Breuer J, Grandjean L. Ortiz AT, et al. Among authors: kendall m. bioRxiv [Preprint]. 2022 Jun 7:2022.06.07.495142. doi: 10.1101/2022.06.07.495142. bioRxiv. 2022. Update in: Elife. 2023 Sep 21;12:e84384. doi: 10.7554/eLife.84384 PMID: 35702156 Free PMC article. Updated. Preprint.
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic.
Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Villabona Arenas J, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russell T, Funk S, Liu Y, Abbott S. Sherratt K, et al. Among authors: kendall m. Wellcome Open Res. 2024 Jan 8;9:12. doi: 10.12688/wellcomeopenres.19601.1. eCollection 2024. Wellcome Open Res. 2024. PMID: 38784437 Free PMC article.
1,133 results