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Page 1
Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection.
Rincon-Sandoval M, De-Kayne R, Shank SD, Pirro S, Ko'ou A, Abueg L, Tracey A, Mountcastle J, O'Toole B, Balacco J, Formenti G, Jarvis ED, Arcila D, Kosakovsky Pond SL, Davis A, Bloom DD, Betancur-R R. Rincon-Sandoval M, et al. Among authors: kosakovsky pond sl. Nat Commun. 2024 Nov 20;15(1):10040. doi: 10.1038/s41467-024-54184-3. Nat Commun. 2024. PMID: 39567489 Free PMC article.
AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters.
Weaver S, Dávila Conn VM, Ji D, Verdonk H, Ávila-Ríos S, Leigh Brown AJ, Wertheim JO, Kosakovsky Pond SL. Weaver S, et al. Among authors: kosakovsky pond sl. Front Bioinform. 2024 Jul 10;4:1400003. doi: 10.3389/fbinf.2024.1400003. eCollection 2024. Front Bioinform. 2024. PMID: 39086842 Free PMC article.
The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus.
Langedijk AC, Vrancken B, Lebbink RJ, Wilkins D, Kelly EJ, Baraldi E, Mascareñas de Los Santos AH, Danilenko DM, Choi EH, Palomino MA, Chi H, Keller C, Cohen R, Papenburg J, Pernica J, Greenough A, Richmond P, Martinón-Torres F, Heikkinen T, Stein RT, Hosoya M, Nunes MC, Verwey C, Evers A, Kragten-Tabatabaie L, Suchard MA, Kosakovsky Pond SL, Poletto C, Colizza V, Lemey P, Bont LJ; INFORM-RSV Study Group. Langedijk AC, et al. Among authors: kosakovsky pond sl. Nat Commun. 2024 Apr 10;15(1):3083. doi: 10.1038/s41467-024-47118-6. Nat Commun. 2024. PMID: 38600104 Free PMC article.
AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS.
Weaver S, Dávila-Conn V, Ji D, Verdonk H, Ávila-Ríos S, Leigh Brown AJ, Wertheim JO, Kosakovsky Pond SL. Weaver S, et al. Among authors: kosakovsky pond sl. bioRxiv [Preprint]. 2024 Mar 14:2024.03.11.584522. doi: 10.1101/2024.03.11.584522. bioRxiv. 2024. Update in: Front Bioinform. 2024 Jul 10;4:1400003. doi: 10.3389/fbinf.2024.1400003 PMID: 38559140 Free PMC article. Updated. Preprint.
The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bomberg E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Kosakovsky Pond SL, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler E, Phillippy AM. Makova KD, et al. Among authors: kosakovsky pond sl. bioRxiv [Preprint]. 2023 Dec 1:2023.11.30.569198. doi: 10.1101/2023.11.30.569198. bioRxiv. 2023. Update in: Nature. 2024 Jun;630(8016):401-411. doi: 10.1038/s41586-024-07473-2 PMID: 38077089 Free PMC article. Updated. Preprint.
Anti-COVID drug accelerates viral evolution.
Kosakovsky Pond SL, Martin D. Kosakovsky Pond SL, et al. Nature. 2023 Nov;623(7987):486-487. doi: 10.1038/d41586-023-03248-3. Nature. 2023. PMID: 37875683 No abstract available.
150 results