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A multi-parametric flow cytometric assay to analyze DNA-protein interactions.
Arbab M, Mahony S, Cho H, Chick JM, Rolfe PA, van Hoff JP, Morris VW, Gygi SP, Maas RL, Gifford DK, Sherwood RI. Arbab M, et al. Among authors: gifford dk. Nucleic Acids Res. 2013 Jan;41(2):e38. doi: 10.1093/nar/gks1034. Epub 2012 Nov 11. Nucleic Acids Res. 2013. PMID: 23143268 Free PMC article.
High-throughput mapping of regulatory DNA.
Rajagopal N, Srinivasan S, Kooshesh K, Guo Y, Edwards MD, Banerjee B, Syed T, Emons BJ, Gifford DK, Sherwood RI. Rajagopal N, et al. Among authors: gifford dk. Nat Biotechnol. 2016 Feb;34(2):167-74. doi: 10.1038/nbt.3468. Epub 2016 Jan 25. Nat Biotechnol. 2016. PMID: 26807528 Free PMC article.
Cas9 Functionally Opens Chromatin.
Barkal AA, Srinivasan S, Hashimoto T, Gifford DK, Sherwood RI. Barkal AA, et al. Among authors: gifford dk. PLoS One. 2016 Mar 31;11(3):e0152683. doi: 10.1371/journal.pone.0152683. eCollection 2016. PLoS One. 2016. PMID: 27031353 Free PMC article.
A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface.
Ferreira LM, Meissner TB, Mikkelsen TS, Mallard W, O'Donnell CW, Tilburgs T, Gomes HA, Camahort R, Sherwood RI, Gifford DK, Rinn JL, Cowan CA, Strominger JL. Ferreira LM, et al. Among authors: gifford dk. Proc Natl Acad Sci U S A. 2016 May 10;113(19):5364-9. doi: 10.1073/pnas.1602886113. Epub 2016 Apr 13. Proc Natl Acad Sci U S A. 2016. PMID: 27078102 Free PMC article.
A synergistic DNA logic predicts genome-wide chromatin accessibility.
Hashimoto T, Sherwood RI, Kang DD, Rajagopal N, Barkal AA, Zeng H, Emons BJ, Srinivasan S, Jaakkola T, Gifford DK. Hashimoto T, et al. Among authors: gifford dk. Genome Res. 2016 Oct;26(10):1430-1440. doi: 10.1101/gr.199778.115. Epub 2016 Jul 25. Genome Res. 2016. PMID: 27456004 Free PMC article.
124 results