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The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.
Beale HC, Roger JM, Cattle MA, McKay LT, Thompson DKA, Learned K, Lyle AG, Kephart ET, Currie R, Lam DL, Sanders L, Pfeil J, Vivian J, Bjork I, Salama SR, Haussler D, Vaske OM. Beale HC, et al. Among authors: salama sr. Gigascience. 2021 Mar 13;10(3):giab011. doi: 10.1093/gigascience/giab011. Gigascience. 2021. PMID: 33712853 Free PMC article.
An RNA gene expressed during cortical development evolved rapidly in humans.
Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, Pedersen JS, Katzman S, King B, Onodera C, Siepel A, Kern AD, Dehay C, Igel H, Ares M Jr, Vanderhaeghen P, Haussler D. Pollard KS, et al. Among authors: salama sr. Nature. 2006 Sep 14;443(7108):167-72. doi: 10.1038/nature05113. Epub 2006 Aug 16. Nature. 2006. PMID: 16915236
Human genome ultraconserved elements are ultraselected.
Katzman S, Kern AD, Bejerano G, Fewell G, Fulton L, Wilson RK, Salama SR, Haussler D. Katzman S, et al. Among authors: salama sr. Science. 2007 Aug 17;317(5840):915. doi: 10.1126/science.1142430. Science. 2007. PMID: 17702936
Endangered species hold clues to human evolution.
Lowe CB, Bejerano G, Salama SR, Haussler D. Lowe CB, et al. Among authors: salama sr. J Hered. 2010 Jul-Aug;101(4):437-47. doi: 10.1093/jhered/esq016. Epub 2010 Mar 23. J Hered. 2010. PMID: 20332163 Free PMC article.
GC-biased evolution near human accelerated regions.
Katzman S, Kern AD, Pollard KS, Salama SR, Haussler D. Katzman S, et al. Among authors: salama sr. PLoS Genet. 2010 May 20;6(5):e1000960. doi: 10.1371/journal.pgen.1000960. PLoS Genet. 2010. PMID: 20502635 Free PMC article.
Three periods of regulatory innovation during vertebrate evolution.
Lowe CB, Kellis M, Siepel A, Raney BJ, Clamp M, Salama SR, Kingsley DM, Lindblad-Toh K, Haussler D. Lowe CB, et al. Among authors: salama sr. Science. 2011 Aug 19;333(6045):1019-24. doi: 10.1126/science.1202702. Science. 2011. PMID: 21852499 Free PMC article.
63 results