Bonneau R - Search Results

1

Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1.

Mulligan VK, Workman S, Sun T, Rettie S, Li X, Worrall LJ, Craven TW, King DT, Hosseinzadeh P, Watkins AM, Renfrew PD, Guffy S, Labonte JW, Moretti R, Bonneau R, Strynadka NCJ, Baker D. Mulligan VK, et al. Among authors: bonneau r. Proc Natl Acad Sci U S A. 2021 Mar 23;118(12):e2012800118. doi: 10.1073/pnas.2012800118. Proc Natl Acad Sci U S A. 2021. PMID: 33723038 Free PMC article.

2

Ab initio protein structure prediction of CASP III targets using ROSETTA.

Simons KT, Bonneau R, Ruczinski I, Baker D. Simons KT, et al. Among authors: bonneau r. Proteins. 1999;Suppl 3:171-6. doi: 10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. Proteins. 1999. PMID: 10526365

3

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

Bonneau R, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001 Apr 1;43(1):1-11. doi: 10.1002/1097-0134(20010401)43:1<1::aid-prot1012>3.0.co;2-a. Proteins. 2001. PMID: 11170209

4

Ab initio protein structure prediction: progress and prospects.

Bonneau R, Baker D. Bonneau R, et al. Annu Rev Biophys Biomol Struct. 2001;30:173-89. doi: 10.1146/annurev.biophys.30.1.173. Annu Rev Biophys Biomol Struct. 2001. PMID: 11340057 Review.

5

Functional inferences from blind ab initio protein structure predictions.

Bonneau R, Tsai J, Ruczinski I, Baker D. Bonneau R, et al. J Struct Biol. 2001 May-Jun;134(2-3):186-90. doi: 10.1006/jsbi.2000.4370. J Struct Biol. 2001. PMID: 11551178 Review.

6

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

7

Distributions of beta sheets in proteins with application to structure prediction.

Ruczinski I, Kooperberg C, Bonneau R, Baker D. Ruczinski I, et al. Among authors: bonneau r. Proteins. 2002 Jul 1;48(1):85-97. doi: 10.1002/prot.10123. Proteins. 2002. PMID: 12012340

8

Contact order and ab initio protein structure prediction.

Bonneau R, Ruczinski I, Tsai J, Baker D. Bonneau R, et al. Protein Sci. 2002 Aug;11(8):1937-44. doi: 10.1110/ps.3790102. Protein Sci. 2002. PMID: 12142448 Free PMC article.

9

De novo prediction of three-dimensional structures for major protein families.

Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. Bonneau R, et al. J Mol Biol. 2002 Sep 6;322(1):65-78. doi: 10.1016/s0022-2836(02)00698-8. J Mol Biol. 2002. PMID: 12215415

10

Ab initio methods.

Chivian D, Robertson T, Bonneau R, Baker D. Chivian D, et al. Among authors: bonneau r. Methods Biochem Anal. 2003;44:547-57. doi: 10.1002/0471721204.ch27. Methods Biochem Anal. 2003. PMID: 12647404 Review. No abstract available.

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