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Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.
Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier D, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWO. Edwards RJ, et al. Among authors: rosen bd. BMC Genomics. 2021 Mar 16;22(1):188. doi: 10.1186/s12864-021-07493-6. BMC Genomics. 2021. PMID: 33726677 Free PMC article.
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Field MA, Rosen BD, Dudchenko O, Chan EKF, Minoche AE, Edwards RJ, Barton K, Lyons RJ, Tuipulotu DE, Hayes VM, D Omer A, Colaric Z, Keilwagen J, Skvortsova K, Bogdanovic O, Smith MA, Aiden EL, Smith TPL, Zammit RA, Ballard JWO. Field MA, et al. Among authors: rosen bd. Gigascience. 2020 Apr 1;9(4):giaa027. doi: 10.1093/gigascience/giaa027. Gigascience. 2020. PMID: 32236524 Free PMC article.
Detection of copy number variants in African goats using whole genome sequence data.
Nandolo W, Mészáros G, Wurzinger M, Banda LJ, Gondwe TN, Mulindwa HA, Nakimbugwe HN, Clark EL, Woodward-Greene MJ, Liu M; VarGoats Consortium; Liu GE, Van Tassell CP, Rosen BD, Sölkner J. Nandolo W, et al. Among authors: rosen bd. BMC Genomics. 2021 May 29;22(1):398. doi: 10.1186/s12864-021-07703-1. BMC Genomics. 2021. PMID: 34051743 Free PMC article.
The Australian dingo is an early offshoot of modern breed dogs.
Field MA, Yadav S, Dudchenko O, Esvaran M, Rosen BD, Skvortsova K, Edwards RJ, Keilwagen J, Cochran BJ, Manandhar B, Bustamante S, Rasmussen JA, Melvin RG, Chernoff B, Omer A, Colaric Z, Chan EKF, Minoche AE, Smith TPL, Gilbert MTP, Bogdanovic O, Zammit RA, Thomas T, Aiden EL, Ballard JWO. Field MA, et al. Among authors: rosen bd. Sci Adv. 2022 Apr 22;8(16):eabm5944. doi: 10.1126/sciadv.abm5944. Epub 2022 Apr 22. Sci Adv. 2022. PMID: 35452284 Free PMC article.
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.
Low WY, Rosen BD, Ren Y, Bickhart DM, To TH, Martin FJ, Billis K, Sonstegard TS, Sullivan ST, Hiendleder S, Williams JL, Heaton MP, Smith TPL. Low WY, et al. Among authors: rosen bd. BMC Genomics. 2022 May 4;23(1):344. doi: 10.1186/s12864-022-08561-1. BMC Genomics. 2022. PMID: 35508966 Free PMC article.
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology.
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden EL. Ballard JWO, et al. Among authors: rosen bd. bioRxiv [Preprint]. 2023 Jan 27:2023.01.26.525801. doi: 10.1101/2023.01.26.525801. bioRxiv. 2023. Update in: Gigascience. 2023 Mar 20;12:giad018. doi: 10.1093/gigascience/giad018 PMID: 36747621 Free PMC article. Updated. Preprint.
The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology.
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden EL. Ballard JWO, et al. Among authors: rosen bd. Gigascience. 2023 Mar 20;12:giad018. doi: 10.1093/gigascience/giad018. Epub 2023 Mar 28. Gigascience. 2023. PMID: 36994871 Free PMC article.
Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus.
Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE. Zhou Y, et al. Among authors: rosen bd. BMC Genomics. 2016 Jun 1;17:419. doi: 10.1186/s12864-016-2461-4. BMC Genomics. 2016. PMID: 27245577 Free PMC article.
106 results