Ma'ayan A - Search Results

1

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.

Kropiwnicki E, Evangelista JE, Stein DJ, Clarke DJB, Lachmann A, Kuleshov MV, Jeon M, Jagodnik KM, Ma'ayan A. Kropiwnicki E, et al. Database (Oxford). 2021 Mar 31;2021:baab017. doi: 10.1093/database/baab017. Database (Oxford). 2021. PMID: 33787872 Free PMC article.

2

KEA: kinase enrichment analysis.

Lachmann A, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2009 Mar 1;25(5):684-6. doi: 10.1093/bioinformatics/btp026. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176546 Free PMC article.

3

GATE: software for the analysis and visualization of high-dimensional time series expression data.

MacArthur BD, Lachmann A, Lemischka IR, Ma'ayan A. MacArthur BD, et al. Bioinformatics. 2010 Jan 1;26(1):143-4. doi: 10.1093/bioinformatics/btp628. Epub 2009 Nov 5. Bioinformatics. 2010. PMID: 19892805 Free PMC article.

4

Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A. Lachmann A, et al. BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87. BMC Bioinformatics. 2010. PMID: 20152038 Free PMC article.

5

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.

Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2010 Oct 1;26(19):2438-44. doi: 10.1093/bioinformatics/btq466. Epub 2010 Aug 13. Bioinformatics. 2010. PMID: 20709693 Free PMC article.

6

FNV: light-weight flash-based network and pathway viewer.

Dannenfelser R, Lachmann A, Szenk M, Ma'ayan A. Dannenfelser R, et al. Bioinformatics. 2011 Apr 15;27(8):1181-2. doi: 10.1093/bioinformatics/btr098. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349871 Free PMC article.

7

Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network.

Hernandez M, Lachmann A, Zhao S, Xiao K, Ma'ayan A. Hernandez M, et al. Proc IEEE Int Symp Bioinformatics Bioeng. 2010;2010:180-184. doi: 10.1109/BIBE.2010.75. Proc IEEE Int Symp Bioinformatics Bioeng. 2010. PMID: 21552464 Free PMC article.

8

Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons.

Rozenfeld R, Bushlin I, Gomes I, Tzavaras N, Gupta A, Neves S, Battini L, Gusella GL, Lachmann A, Ma'ayan A, Blitzer RD, Devi LA. Rozenfeld R, et al. PLoS One. 2012;7(1):e29239. doi: 10.1371/journal.pone.0029239. Epub 2012 Jan 3. PLoS One. 2012. PMID: 22235275 Free PMC article.

9

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells.

Xu H, Baroukh C, Dannenfelser R, Chen EY, Tan CM, Kou Y, Kim YE, Lemischka IR, Ma'ayan A. Xu H, et al. Database (Oxford). 2013 Jun 21;2013:bat045. doi: 10.1093/database/bat045. Print 2013. Database (Oxford). 2013. PMID: 23794736 Free PMC article.

10

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Kuleshov MV, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W90-7. doi: 10.1093/nar/gkw377. Epub 2016 May 3. Nucleic Acids Res. 2016. PMID: 27141961 Free PMC article.

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