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Page 1
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples.
MalariaGEN; Ahouidi A, Ali M, Almagro-Garcia J, Amambua-Ngwa A, Amaratunga C, Amato R, Amenga-Etego L, Andagalu B, Anderson TJC, Andrianaranjaka V, Apinjoh T, Ariani C, Ashley EA, Auburn S, Awandare GA, Ba H, Baraka V, Barry AE, Bejon P, Bertin GI, Boni MF, Borrmann S, Bousema T, Branch O, Bull PC, Busby GBJ, Chookajorn T, Chotivanich K, Claessens A, Conway D, Craig A, D'Alessandro U, Dama S, Day NP, Denis B, Diakite M, Djimdé A, Dolecek C, Dondorp AM, Drakeley C, Drury E, Duffy P, Echeverry DF, Egwang TG, Erko B, Fairhurst RM, Faiz A, Fanello CA, Fukuda MM, Gamboa D, Ghansah A, Golassa L, Goncalves S, Hamilton WL, Harrison GLA, Hart L, Henrichs C, Hien TT, Hill CA, Hodgson A, Hubbart C, Imwong M, Ishengoma DS, Jackson SA, Jacob CG, Jeffery B, Jeffreys AE, Johnson KJ, Jyothi D, Kamaliddin C, Kamau E, Kekre M, Kluczynski K, Kochakarn T, Konaté A, Kwiatkowski DP, Kyaw MP, Lim P, Lon C, Loua KM, Maïga-Ascofaré O, Malangone C, Manske M, Marfurt J, Marsh K, Mayxay M, Miles A, Miotto O, Mobegi V, Mokuolu OA, Montgomery J, Mueller I, Newton PN, Nguyen T, Nguyen TN, Noedl H, Nosten F, Noviyanti R, Nzila A, Ochola-Oyier LI, Ocholla H, Oduro A, Omedo I, Onyamboko MA, Ouedraogo JB, Oy… See abstract for full author list ➔ MalariaGEN, et al. Among authors: jeffery b. Wellcome Open Res. 2021 Jul 13;6:42. doi: 10.12688/wellcomeopenres.16168.2. eCollection 2021. Wellcome Open Res. 2021. PMID: 33824913 Free PMC article.
Genomic epidemiology of artemisinin resistant malaria.
MalariaGEN Plasmodium falciparum Community Project. MalariaGEN Plasmodium falciparum Community Project. Elife. 2016 Mar 4;5:e08714. doi: 10.7554/eLife.08714. Elife. 2016. PMID: 26943619 Free PMC article.
Genomic analysis of local variation and recent evolution in Plasmodium vivax.
Pearson RD, Amato R, Auburn S, Miotto O, Almagro-Garcia J, Amaratunga C, Suon S, Mao S, Noviyanti R, Trimarsanto H, Marfurt J, Anstey NM, William T, Boni MF, Dolecek C, Hien TT, White NJ, Michon P, Siba P, Tavul L, Harrison G, Barry A, Mueller I, Ferreira MU, Karunaweera N, Randrianarivelojosia M, Gao Q, Hubbart C, Hart L, Jeffery B, Drury E, Mead D, Kekre M, Campino S, Manske M, Cornelius VJ, MacInnis B, Rockett KA, Miles A, Rayner JC, Fairhurst RM, Nosten F, Price RN, Kwiatkowski DP. Pearson RD, et al. Among authors: jeffery b. Nat Genet. 2016 Aug;48(8):959-964. doi: 10.1038/ng.3599. Epub 2016 Jun 27. Nat Genet. 2016. PMID: 27348299 Free PMC article.
Panoptes: web-based exploration of large scale genome variation data.
Vauterin P, Jeffery B, Miles A, Amato R, Hart L, Wright I, Kwiatkowski D. Vauterin P, et al. Among authors: jeffery b. Bioinformatics. 2017 Oct 15;33(20):3243-3249. doi: 10.1093/bioinformatics/btx410. Bioinformatics. 2017. PMID: 29028261 Free PMC article.
Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination.
Jacob CG, Thuy-Nhien N, Mayxay M, Maude RJ, Quang HH, Hongvanthong B, Vanisaveth V, Ngo Duc T, Rekol H, van der Pluijm R, von Seidlein L, Fairhurst R, Nosten F, Hossain MA, Park N, Goodwin S, Ringwald P, Chindavongsa K, Newton P, Ashley E, Phalivong S, Maude R, Leang R, Huch C, Dong LT, Nguyen KT, Nhat TM, Hien TT, Nguyen H, Zdrojewski N, Canavati S, Sayeed AA, Uddin D, Buckee C, Fanello CI, Onyamboko M, Peto T, Tripura R, Amaratunga C, Myint Thu A, Delmas G, Landier J, Parker DM, Chau NH, Lek D, Suon S, Callery J, Jittamala P, Hanboonkunupakarn B, Pukrittayakamee S, Phyo AP, Smithuis F, Lin K, Thant M, Hlaing TM, Satpathi P, Satpathi S, Behera PK, Tripura A, Baidya S, Valecha N, Anvikar AR, Ul Islam A, Faiz A, Kunasol C, Drury E, Kekre M, Ali M, Love K, Rajatileka S, Jeffreys AE, Rowlands K, Hubbart CS, Dhorda M, Vongpromek R, Kotanan N, Wongnak P, Almagro Garcia J, Pearson RD, Ariani CV, Chookajorn T, Malangone C, Nguyen T, Stalker J, Jeffery B, Keatley J, Johnson KJ, Muddyman D, Chan XHS, Sillitoe J, Amato R, Simpson V, Gonçalves S, Rockett K, Day NP, Dondorp AM, Kwiatkowski DP, Miotto O. Jacob CG, et al. Among authors: jeffery b. Elife. 2021 Aug 10;10:e62997. doi: 10.7554/eLife.62997. Elife. 2021. PMID: 34372970 Free PMC article.
Genetic diversity of the African malaria vector Anopheles gambiae.
Anopheles gambiae 1000 Genomes Consortium; Data analysis group; Partner working group; Sample collections—Angola:; Burkina Faso:; Cameroon:; Gabon:; Guinea:; Guinea-Bissau:; Kenya:; Uganda:; Crosses:; Sequencing and data production; Web application development; Project coordination. Anopheles gambiae 1000 Genomes Consortium, et al. Nature. 2017 Dec 7;552(7683):96-100. doi: 10.1038/nature24995. Epub 2017 Nov 29. Nature. 2017. PMID: 29186111 Free PMC article.
Efficient ancestry and mutation simulation with msprime 1.0.
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J. Baumdicker F, et al. Among authors: jeffery b. Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229. Genetics. 2022. PMID: 34897427 Free PMC article.
A unified genealogy of modern and ancient genomes.
Wohns AW, Wong Y, Jeffery B, Akbari A, Mallick S, Pinhasi R, Patterson N, Reich D, Kelleher J, McVean G. Wohns AW, et al. Among authors: jeffery b. Science. 2022 Feb 25;375(6583):eabi8264. doi: 10.1126/science.abi8264. Epub 2022 Feb 25. Science. 2022. PMID: 35201891 Free PMC article.
Analysis-ready VCF at Biobank scale using Zarr.
Czech E, Millar TR, Tyler W, White T, Jeffery B, Miles A, Tallman S, Wojdyla R, Zabad S, Hammerbacher J, Kelleher J. Czech E, et al. Among authors: jeffery b. bioRxiv [Preprint]. 2024 Nov 15:2024.06.11.598241. doi: 10.1101/2024.06.11.598241. bioRxiv. 2024. PMID: 38915693 Free PMC article. Preprint.
On the genes, genealogies, and geographies of Quebec.
Anderson-Trocmé L, Nelson D, Zabad S, Diaz-Papkovich A, Kryukov I, Baya N, Touvier M, Jeffery B, Dina C, Vézina H, Kelleher J, Gravel S. Anderson-Trocmé L, et al. Among authors: jeffery b. Science. 2023 May 26;380(6647):849-855. doi: 10.1126/science.add5300. Epub 2023 May 25. Science. 2023. PMID: 37228217 Free article.
80 results