Khalid S - Search Results

1

Coarse-Grained Molecular Dynamics Simulations of Membrane Proteins: A Practical Guide.

Glass WG, Essex JW, Fraternali F, Gebbie-Rayet J, Marzuoli I, Samways ML, Biggin PC, Khalid S. Glass WG, et al. Among authors: khalid s. Methods Mol Biol. 2021;2302:253-273. doi: 10.1007/978-1-0716-1394-8_14. Methods Mol Biol. 2021. PMID: 33877632

2

Coarse-grained molecular dynamics simulations of membrane proteins and peptides.

Bond PJ, Holyoake J, Ivetac A, Khalid S, Sansom MS. Bond PJ, et al. Among authors: khalid s. J Struct Biol. 2007 Mar;157(3):593-605. doi: 10.1016/j.jsb.2006.10.004. Epub 2006 Oct 20. J Struct Biol. 2007. PMID: 17116404

3

Molecular dynamics simulations of a bacterial autotransporter: NalP from Neisseria meningitidis.

Khalid S, Sansom MS. Khalid S, et al. Mol Membr Biol. 2006 Nov-Dec;23(6):499-508. doi: 10.1080/09687860600849531. Mol Membr Biol. 2006. PMID: 17127622 Free article.

4

Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

Scott KA, Bond PJ, Ivetac A, Chetwynd AP, Khalid S, Sansom MS. Scott KA, et al. Among authors: khalid s. Structure. 2008 Apr;16(4):621-30. doi: 10.1016/j.str.2008.01.014. Structure. 2008. PMID: 18400182 Free article.

5

Self-assembly of a simple membrane protein: coarse-grained molecular dynamics simulations of the influenza M2 channel.

Carpenter T, Bond PJ, Khalid S, Sansom MS. Carpenter T, et al. Among authors: khalid s. Biophys J. 2008 Oct;95(8):3790-801. doi: 10.1529/biophysj.108.131078. Epub 2008 Jul 11. Biophys J. 2008. PMID: 18621807 Free PMC article.

6

Antimicrobial and cell-penetrating peptides: structure, assembly and mechanisms of membrane lysis via atomistic and coarse-grained molecular dynamics simulations.

Bond PJ, Khalid S. Bond PJ, et al. Among authors: khalid s. Protein Pept Lett. 2010 Nov;17(11):1313-27. doi: 10.2174/0929866511009011313. Protein Pept Lett. 2010. PMID: 20673230 Review.

7

Bookshelf: a simple curation system for the storage of biomolecular simulation data.

Vohra S, Hall BA, Holdbrook DA, Khalid S, Biggin PC. Vohra S, et al. Among authors: khalid s. Database (Oxford). 2010 Dec 17;2010:baq033. doi: 10.1093/database/baq033. Print 2010. Database (Oxford). 2010. PMID: 21169341 Free PMC article.

8

Multiscale molecular dynamics simulations of membrane proteins.

Khalid S, Bond PJ. Khalid S, et al. Methods Mol Biol. 2013;924:635-57. doi: 10.1007/978-1-62703-017-5_25. Methods Mol Biol. 2013. PMID: 23034767 Review.

9

The simulation approach to lipid-protein interactions.

Paramo T, Garzón D, Holdbrook DA, Khalid S, Bond PJ. Paramo T, et al. Among authors: khalid s. Methods Mol Biol. 2013;974:435-55. doi: 10.1007/978-1-62703-275-9_19. Methods Mol Biol. 2013. PMID: 23404287

10

Atomistic molecular-dynamics simulations enable prediction of the arginine permeation pathway through OccD1/OprD from Pseudomonas aeruginosa.

Parkin J, Khalid S. Parkin J, et al. Among authors: khalid s. Biophys J. 2014 Oct 21;107(8):1853-1861. doi: 10.1016/j.bpj.2014.08.035. Biophys J. 2014. PMID: 25418166 Free PMC article.

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