Holmes EC - Search Results

1

Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand.

Geoghegan JL, Douglas J, Ren X, Storey M, Hadfield J, Silander OK, Freed NE, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Sporle A, Baker MG, Murdoch DR, Drummond AJ, Welch D, Simpson CR, French N, Holmes EC, de Ligt J. Geoghegan JL, et al. Among authors: holmes ec. Emerg Infect Dis. 2021 May;27(5):1317-1322. doi: 10.3201/eid2705.204579. Emerg Infect Dis. 2021. PMID: 33900175 Free PMC article.

2

The evolutionary genetics of viral emergence.

Holmes EC, Drummond AJ. Holmes EC, et al. Curr Top Microbiol Immunol. 2007;315:51-66. doi: 10.1007/978-3-540-70962-6_3. Curr Top Microbiol Immunol. 2007. PMID: 17848060 Free PMC article. Review.

3

Virological factors that increase the transmissibility of emerging human viruses.

Geoghegan JL, Senior AM, Di Giallonardo F, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4170-5. doi: 10.1073/pnas.1521582113. Epub 2016 Mar 21. Proc Natl Acad Sci U S A. 2016. PMID: 27001840 Free PMC article.

4

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods.

Duchêne S, Geoghegan JL, Holmes EC, Ho SY. Duchêne S, et al. Among authors: holmes ec. Bioinformatics. 2016 Nov 15;32(22):3375-3379. doi: 10.1093/bioinformatics/btw421. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412094

5

Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence.

Geoghegan JL, Senior AM, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. Proc Biol Sci. 2016 Aug 31;283(1837):20160727. doi: 10.1098/rspb.2016.0727. Proc Biol Sci. 2016. PMID: 27581875 Free PMC article.

6

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.

Geoghegan JL, Duchêne S, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. PLoS Pathog. 2017 Feb 8;13(2):e1006215. doi: 10.1371/journal.ppat.1006215. eCollection 2017 Feb. PLoS Pathog. 2017. PMID: 28178344 Free PMC article.

7

Predicting virus emergence amid evolutionary noise.

Geoghegan JL, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. Open Biol. 2017 Oct;7(10):170189. doi: 10.1098/rsob.170189. Open Biol. 2017. PMID: 29070612 Free PMC article. Review.

8

Continental synchronicity of human influenza virus epidemics despite climatic variation.

Geoghegan JL, Saavedra AF, Duchêne S, Sullivan S, Barr I, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. PLoS Pathog. 2018 Jan 11;14(1):e1006780. doi: 10.1371/journal.ppat.1006780. eCollection 2018 Jan. PLoS Pathog. 2018. PMID: 29324895 Free PMC article.

9

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia.

Di Giallonardo F, Kok J, Fernandez M, Carter I, Geoghegan JL, Dwyer DE, Holmes EC, Eden JS. Di Giallonardo F, et al. Among authors: holmes ec. Viruses. 2018 Sep 6;10(9):476. doi: 10.3390/v10090476. Viruses. 2018. PMID: 30200580 Free PMC article.

10

The phylogenomics of evolving virus virulence.

Geoghegan JL, Holmes EC. Geoghegan JL, et al. Among authors: holmes ec. Nat Rev Genet. 2018 Dec;19(12):756-769. doi: 10.1038/s41576-018-0055-5. Nat Rev Genet. 2018. PMID: 30305704 Free PMC article. Review.

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