Bu D - Search Results

1

CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction.

Ju F, Zhu J, Shao B, Kong L, Liu TY, Zheng WM, Bu D. Ju F, et al. Among authors: bu d. Nat Commun. 2021 May 5;12(1):2535. doi: 10.1038/s41467-021-22869-8. Nat Commun. 2021. PMID: 33953201 Free PMC article.

2

Incorporating Ab Initio energy into threading approaches for protein structure prediction.

Shao M, Wang S, Wang C, Yuan X, Li SC, Zheng W, Bu D. Shao M, et al. Among authors: bu d. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S54. doi: 10.1186/1471-2105-12-S1-S54. BMC Bioinformatics. 2011. PMID: 21342587 Free PMC article.

3

FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.

Wang C, Zhang H, Zheng WM, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D. Wang C, et al. Among authors: bu d. Bioinformatics. 2016 Feb 1;32(3):462-4. doi: 10.1093/bioinformatics/btv581. Epub 2015 Oct 10. Bioinformatics. 2016. PMID: 26454278 Free PMC article.

4

Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix.

Zhang H, Gao Y, Deng M, Wang C, Zhu J, Li SC, Zheng WM, Bu D. Zhang H, et al. Among authors: bu d. Biochem Biophys Res Commun. 2016 Mar 25;472(1):217-22. doi: 10.1016/j.bbrc.2016.01.188. Epub 2016 Feb 23. Biochem Biophys Res Commun. 2016. PMID: 26920058

5

Improving prediction of burial state of residues by exploiting correlation among residues.

Gong H, Zhang H, Zhu J, Wang C, Sun S, Zheng WM, Bu D. Gong H, et al. Among authors: bu d. BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):70. doi: 10.1186/s12859-017-1475-5. BMC Bioinformatics. 2017. PMID: 28361691 Free PMC article.

6

Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.

Zhu J, Zhang H, Li SC, Wang C, Kong L, Sun S, Zheng WM, Bu D. Zhu J, et al. Among authors: bu d. Bioinformatics. 2017 Dec 1;33(23):3749-3757. doi: 10.1093/bioinformatics/btx514. Bioinformatics. 2017. PMID: 28961795

7

Protein threading using residue co-variation and deep learning.

Zhu J, Wang S, Bu D, Xu J. Zhu J, et al. Among authors: bu d. Bioinformatics. 2018 Jul 1;34(13):i263-i273. doi: 10.1093/bioinformatics/bty278. Bioinformatics. 2018. PMID: 29949980 Free PMC article.

8

Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.

Wang C, Wei Y, Zhang H, Kong L, Sun S, Zheng WM, Bu D. Wang C, et al. Among authors: bu d. BMC Bioinformatics. 2019 Mar 29;20(Suppl 3):135. doi: 10.1186/s12859-019-2652-5. BMC Bioinformatics. 2019. PMID: 30925867 Free PMC article.

9

De novo glycan structural identification from mass spectra using tree merging strategy.

Ju F, Zhang J, Bu D, Li Y, Zhou J, Wang H, Wang Y, Huang C, Sun S. Ju F, et al. Among authors: bu d. Comput Biol Chem. 2019 Jun;80:217-224. doi: 10.1016/j.compbiolchem.2019.03.015. Epub 2019 Mar 30. Comput Biol Chem. 2019. PMID: 30999248

10

DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning.

Chen H, Shaw D, Zeng J, Bu D, Jiang T. Chen H, et al. Among authors: bu d. Bioinformatics. 2019 Jul 15;35(14):i284-i294. doi: 10.1093/bioinformatics/btz367. Bioinformatics. 2019. PMID: 31510699 Free PMC article.

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