Nanni L - Search Results

1

Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes.

Liu Y, Nanni L, Sungalee S, Zufferey M, Tavernari D, Mina M, Ceri S, Oricchio E, Ciriello G. Liu Y, et al. Among authors: nanni l. Nat Commun. 2021 May 10;12(1):2439. doi: 10.1038/s41467-021-22666-3. Nat Commun. 2021. PMID: 33972523 Free PMC article.

2

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.

Masseroli M, Canakoglu A, Pinoli P, Kaitoua A, Gulino A, Horlova O, Nanni L, Bernasconi A, Perna S, Stamoulakatou E, Ceri S. Masseroli M, et al. Among authors: nanni l. Bioinformatics. 2019 Mar 1;35(5):729-736. doi: 10.1093/bioinformatics/bty688. Bioinformatics. 2019. PMID: 30101316

3

Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages.

Wang C, Nanni L, Novakovic B, Megchelenbrink W, Kuznetsova T, Stunnenberg HG, Ceri S, Logie C. Wang C, et al. Among authors: nanni l. Sci Rep. 2019 Feb 26;9(1):2772. doi: 10.1038/s41598-019-39395-9. Sci Rep. 2019. PMID: 30809020 Free PMC article.

4

PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets.

Nanni L, Pinoli P, Canakoglu A, Ceri S. Nanni L, et al. BMC Bioinformatics. 2019 Nov 8;20(1):560. doi: 10.1186/s12859-019-3159-9. BMC Bioinformatics. 2019. PMID: 31703553 Free PMC article.

5

Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries.

Nanni L, Ceri S, Logie C. Nanni L, et al. Genome Biol. 2020 Aug 12;21(1):197. doi: 10.1186/s13059-020-02108-x. Genome Biol. 2020. PMID: 32782014 Free PMC article.

6

Exploring chromatin conformation and gene co-expression through graph embedding.

Varrone M, Nanni L, Ciriello G, Ceri S. Varrone M, et al. Among authors: nanni l. Bioinformatics. 2020 Dec 30;36(Suppl_2):i700-i708. doi: 10.1093/bioinformatics/btaa803. Bioinformatics. 2020. PMID: 33381846

7

Federated sharing and processing of genomic datasets for tertiary data analysis.

Canakoglu A, Pinoli P, Gulino A, Nanni L, Masseroli M, Ceri S. Canakoglu A, et al. Among authors: nanni l. Brief Bioinform. 2021 May 20;22(3):bbaa091. doi: 10.1093/bib/bbaa091. Brief Bioinform. 2021. PMID: 34020536 Review.

8

Whole-genome doubling drives oncogenic loss of chromatin segregation.

Lambuta RA, Nanni L, Liu Y, Diaz-Miyar J, Iyer A, Tavernari D, Katanayeva N, Ciriello G, Oricchio E. Lambuta RA, et al. Among authors: nanni l. Nature. 2023 Mar;615(7954):925-933. doi: 10.1038/s41586-023-05794-2. Epub 2023 Mar 15. Nature. 2023. PMID: 36922594 Free PMC article.

9

Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data.

Cristovao F, Cascianelli S, Canakoglu A, Carman M, Nanni L, Pinoli P, Masseroli M. Cristovao F, et al. Among authors: nanni l. IEEE/ACM Trans Comput Biol Bioinform. 2022 Jan-Feb;19(1):121-134. doi: 10.1109/TCBB.2020.3042309. Epub 2022 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 33270566

10

Author Correction: Adaptive gene loss in the common bean pan-genome during range expansion and domestication.

Cortinovis G, Vincenzi L, Anderson R, Marturano G, Marsh JI, Bayer PE, Rocchetti L, Frascarelli G, Lanzavecchia G, Pieri A, Benazzo A, Bellucci E, Di Vittori V, Nanni L, Ferreira Fernández JJ, Rossato M, Aguilar OM, Morrell PL, Rodriguez M, Gioia T, Neumann K, Alvarez Diaz JC, Gratias A, Klopp C, Bitocchi E, Geffroy V, Delledonne M, Edwards D, Papa R. Cortinovis G, et al. Among authors: nanni l. Nat Commun. 2024 Oct 8;15(1):8715. doi: 10.1038/s41467-024-52864-8. Nat Commun. 2024. PMID: 39379381 Free PMC article. No abstract available.

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