Botzki A - Search Results

1

AutoSpill is a principled framework that simplifies the analysis of multichromatic flow cytometry data.

Roca CP, Burton OT, Gergelits V, Prezzemolo T, Whyte CE, Halpert R, Kreft Ł, Collier J, Botzki A, Spidlen J, Humblet-Baron S, Liston A. Roca CP, et al. Among authors: botzki a. Nat Commun. 2021 May 17;12(1):2890. doi: 10.1038/s41467-021-23126-8. Nat Commun. 2021. PMID: 34001872 Free PMC article.

2

Making Bioinformatics Training Events and Material More Discoverable Using TeSS, the ELIXIR Training Portal.

Bacall F, Apaolaza A, Andrabi M, Child C, Goble C, Sand O, Botzki A. Bacall F, et al. Among authors: botzki a. Curr Protoc. 2023 Feb;3(2):e682. doi: 10.1002/cpz1.682. Curr Protoc. 2023. PMID: 36809564

3

Staying on track - Keeping things running in a high-end scientific imaging core facility.

Renaud O, Aulner N, Salles A, Halidi N, Brunstein M, Mallet A, Aumayr K, Terjung S, Levy D, Lippens S, Verbavatz JM, Heuser T, Santarella-Mellwig R, Tinevez JY, Woller T, Botzki A, Cawthorne C; Core4Life Consortium; Munck S. Renaud O, et al. Among authors: botzki a. J Microsc. 2024 Jun;294(3):276-294. doi: 10.1111/jmi.13304. Epub 2024 Apr 24. J Microsc. 2024. PMID: 38656474 Review.

4

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017.

Kreft L, Soete A, Hulpiau P, Botzki A, Saeys Y, De Bleser P. Kreft L, et al. Among authors: botzki a. Nucleic Acids Res. 2017 Jul 3;45(W1):W490-W494. doi: 10.1093/nar/gkx376. Nucleic Acids Res. 2017. PMID: 28472390 Free PMC article.

5

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.

Kreft L, Botzki A, Coppens F, Vandepoele K, Van Bel M. Kreft L, et al. Among authors: botzki a. Bioinformatics. 2017 Sep 15;33(18):2946-2947. doi: 10.1093/bioinformatics/btx324. Bioinformatics. 2017. PMID: 28525531

6

The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis.

Miettinen K, Iñigo S, Kreft L, Pollier J, De Bo C, Botzki A, Coppens F, Bak S, Goossens A. Miettinen K, et al. Among authors: botzki a. Nucleic Acids Res. 2018 Jan 4;46(D1):D586-D594. doi: 10.1093/nar/gkx925. Nucleic Acids Res. 2018. PMID: 29045755 Free PMC article.

7

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.

Van Bel M, Diels T, Vancaester E, Kreft L, Botzki A, Van de Peer Y, Coppens F, Vandepoele K. Van Bel M, et al. Among authors: botzki a. Nucleic Acids Res. 2018 Jan 4;46(D1):D1190-D1196. doi: 10.1093/nar/gkx1002. Nucleic Acids Res. 2018. PMID: 29069403 Free PMC article.

8

Scop3D: Online Visualization of Mutation Rates on Protein Structure.

Kreft L, Turan D, Hulstaert N, Botzki A, Martens L, Vandermarliere E. Kreft L, et al. Among authors: botzki a. J Proteome Res. 2019 Feb 1;18(2):765-769. doi: 10.1021/acs.jproteome.8b00681. Epub 2018 Dec 17. J Proteome Res. 2019. PMID: 30540477

9

Protein Homeostasis Database: protein quality control in E.coli.

Ramakrishnan R, Houben B, Kreft Ł, Botzki A, Schymkowitz J, Rousseau F. Ramakrishnan R, et al. Among authors: botzki a. Bioinformatics. 2020 Feb 1;36(3):948-949. doi: 10.1093/bioinformatics/btz628. Bioinformatics. 2020. PMID: 31392322 Free PMC article.

10

TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes.

Bucchini F, Del Cortona A, Kreft Ł, Botzki A, Van Bel M, Vandepoele K. Bucchini F, et al. Among authors: botzki a. Nucleic Acids Res. 2021 Sep 27;49(17):e101. doi: 10.1093/nar/gkab565. Nucleic Acids Res. 2021. PMID: 34197621 Free PMC article.

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