Hou J - Search Results

1

Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14.

Chen X, Liu J, Guo Z, Wu T, Hou J, Cheng J. Chen X, et al. Among authors: hou j. Sci Rep. 2021 May 25;11(1):10943. doi: 10.1038/s41598-021-90303-6. Sci Rep. 2021. PMID: 34035363 Free PMC article.

2

From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data.

Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, Cheng J. Li J, et al. Among authors: hou j. PLoS One. 2015 Apr 22;10(4):e0125000. doi: 10.1371/journal.pone.0125000. eCollection 2015. PLoS One. 2015. PMID: 25902288 Free PMC article.

3

An overview of bioinformatics methods for modeling biological pathways in yeast.

Hou J, Acharya L, Zhu D, Cheng J. Hou J, et al. Brief Funct Genomics. 2016 Mar;15(2):95-108. doi: 10.1093/bfgp/elv040. Epub 2015 Oct 17. Brief Funct Genomics. 2016. PMID: 26476430 Free PMC article. Review.

4

Improving Protein Fold Recognition by Deep Learning Networks.

Jo T, Hou J, Eickholt J, Cheng J. Jo T, et al. Among authors: hou j. Sci Rep. 2015 Dec 4;5:17573. doi: 10.1038/srep17573. Sci Rep. 2015. PMID: 26634993 Free PMC article.

5

Effects of aged garlic extract and FruArg on gene expression and signaling pathways in lipopolysaccharide-activated microglial cells.

Song H, Lu Y, Qu Z, Mossine VV, Martin MB, Hou J, Cui J, Peculis BA, Mawhinney TP, Cheng J, Greenlief CM, Fritsche K, Schmidt FJ, Walter RB, Lubahn DB, Sun GY, Gu Z. Song H, et al. Among authors: hou j. Sci Rep. 2016 Oct 13;6:35323. doi: 10.1038/srep35323. Sci Rep. 2016. PMID: 27734935 Free PMC article.

6

DeepQA: improving the estimation of single protein model quality with deep belief networks.

Cao R, Bhattacharya D, Hou J, Cheng J. Cao R, et al. Among authors: hou j. BMC Bioinformatics. 2016 Dec 5;17(1):495. doi: 10.1186/s12859-016-1405-y. BMC Bioinformatics. 2016. PMID: 27919220 Free PMC article.

7

ConEVA: a toolbox for comprehensive assessment of protein contacts.

Adhikari B, Nowotny J, Bhattacharya D, Hou J, Cheng J. Adhikari B, et al. Among authors: hou j. BMC Bioinformatics. 2016 Dec 7;17(1):517. doi: 10.1186/s12859-016-1404-z. BMC Bioinformatics. 2016. PMID: 27923350 Free PMC article.

8

QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.

Cao R, Adhikari B, Bhattacharya D, Sun M, Hou J, Cheng J. Cao R, et al. Among authors: hou j. Bioinformatics. 2017 Feb 15;33(4):586-588. doi: 10.1093/bioinformatics/btw694. Bioinformatics. 2017. PMID: 28035027 Free PMC article.

9

Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods.

Hou J, Stacey G, Cheng J. Hou J, et al. EURASIP J Bioinform Syst Biol. 2015 Jun 20;2015:5. doi: 10.1186/s13637-015-0026-5. eCollection 2015 Dec. EURASIP J Bioinform Syst Biol. 2015. PMID: 28194174 Free PMC article.

10

Deep learning methods for protein torsion angle prediction.

Li H, Hou J, Adhikari B, Lyu Q, Cheng J. Li H, et al. Among authors: hou j. BMC Bioinformatics. 2017 Sep 18;18(1):417. doi: 10.1186/s12859-017-1834-2. BMC Bioinformatics. 2017. PMID: 28923002 Free PMC article.

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