Timko MP - Search Results

1

scDetect: a rank-based ensemble learning algorithm for cell type identification of single-cell RNA sequencing in cancer.

Shen Y, Chu Q, Timko MP, Fan L. Shen Y, et al. Among authors: timko mp. Bioinformatics. 2021 Nov 18;37(22):4115-4122. doi: 10.1093/bioinformatics/btab410. Bioinformatics. 2021. PMID: 34048541

2

TOD-CUP: a gene expression rank-based majority vote algorithm for tissue origin diagnosis of cancers of unknown primary.

Shen Y, Chu Q, Yin X, He Y, Bai P, Wang Y, Fang W, Timko MP, Fan L, Jiang W. Shen Y, et al. Among authors: timko mp. Brief Bioinform. 2021 Mar 22;22(2):2106-2118. doi: 10.1093/bib/bbaa031. Brief Bioinform. 2021. PMID: 32266390

3

EMLI-ICC: an ensemble machine learning-based integration algorithm for metastasis prediction and risk stratification in intrahepatic cholangiocarcinoma.

Ruan J, Xu S, Chen R, Qu W, Li Q, Ye C, Wu W, Jiang Q, Yan F, Shen E, Chu Q, Jia Y, Zhang X, Fu W, Chen J, Timko MP, Zhao P, Fan L, Shen Y. Ruan J, et al. Among authors: timko mp. Brief Bioinform. 2022 Nov 19;23(6):bbac450. doi: 10.1093/bib/bbac450. Brief Bioinform. 2022. PMID: 36259363

4

Large-scale identification of extracellular plant miRNAs in mammals implicates their dietary intake.

Chen X, Liu L, Chu Q, Sun S, Wu Y, Tong Z, Fang W, Timko MP, Fan L. Chen X, et al. Among authors: timko mp. PLoS One. 2021 Sep 29;16(9):e0257878. doi: 10.1371/journal.pone.0257878. eCollection 2021. PLoS One. 2021. PMID: 34587184 Free PMC article.

5

A naive Bayes algorithm for tissue origin diagnosis (TOD-Bayes) of synchronous multifocal tumors in the hepatobiliary and pancreatic system.

Jiang W, Shen Y, Ding Y, Ye C, Zheng Y, Zhao P, Liu L, Tong Z, Zhou L, Sun S, Zhang X, Teng L, Timko MP, Fan L, Fang W. Jiang W, et al. Among authors: timko mp. Int J Cancer. 2018 Jan 15;142(2):357-368. doi: 10.1002/ijc.31054. Epub 2017 Oct 16. Int J Cancer. 2018. PMID: 28921531

6

Signaling pathway perturbation analysis for assessment of biological impact of cigarette smoke on lung cells.

Chen H, Chen X, Shen Y, Yin X, Liu F, Liu L, Yao J, Chu Q, Wang Y, Qi H, Timko MP, Fang W, Fan L. Chen H, et al. Among authors: timko mp. Sci Rep. 2021 Aug 18;11(1):16715. doi: 10.1038/s41598-021-95938-z. Sci Rep. 2021. PMID: 34408184 Free PMC article.

7

Multi-omics molecular biomarkers and database of osteoarthritis.

Li J, Yang X, Chu Q, Xie L, Ding Y, Xu X, Timko MP, Fan L. Li J, et al. Among authors: timko mp. Database (Oxford). 2022 Jul 5;2022:baac052. doi: 10.1093/database/baac052. Database (Oxford). 2022. PMID: 35788653 Free PMC article.

8

The Circular RNA Profiles of Colorectal Tumor Metastatic Cells.

Jiang W, Zhang X, Chu Q, Lu S, Zhou L, Lu X, Liu C, Mao L, Ye C, Timko MP, Fan L, Ju H. Jiang W, et al. Among authors: timko mp. Front Genet. 2018 Feb 9;9:34. doi: 10.3389/fgene.2018.00034. eCollection 2018. Front Genet. 2018. PMID: 29479369 Free PMC article.

9

Dynamic Alterations in the Respiratory Tract Microbiota of Patients with COVID-19 and its Association with Microbiota in the Gut.

Shen Y, Yu F, Zhang D, Zou Q, Xie M, Chen X, Yuan L, Lou B, Xie G, Wang R, Yang X, Chen W, Wang Q, Feng B, Teng Y, Dong Y, Huang L, Bao J, Han D, Liu C, Wu W, Liu X, Fan L, Timko MP, Zheng S, Chen Y. Shen Y, et al. Among authors: timko mp. Adv Sci (Weinh). 2022 Sep;9(27):e2200956. doi: 10.1002/advs.202200956. Epub 2022 Jul 3. Adv Sci (Weinh). 2022. PMID: 35780499 Free PMC article.

10

Transcriptome sequencing reveals e-cigarette vapor and mainstream-smoke from tobacco cigarettes activate different gene expression profiles in human bronchial epithelial cells.

Shen Y, Wolkowicz MJ, Kotova T, Fan L, Timko MP. Shen Y, et al. Among authors: timko mp. Sci Rep. 2016 Apr 4;6:23984. doi: 10.1038/srep23984. Sci Rep. 2016. PMID: 27041137 Free PMC article.

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