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Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells.
Appelberg S, Gupta S, Svensson Akusjärvi S, Ambikan AT, Mikaeloff F, Saccon E, Végvári Á, Benfeitas R, Sperk M, Ståhlberg M, Krishnan S, Singh K, Penninger JM, Mirazimi A, Neogi U. Appelberg S, et al. Among authors: gupta s. Emerg Microbes Infect. 2020 Dec;9(1):1748-1760. doi: 10.1080/22221751.2020.1799723. Emerg Microbes Infect. 2020. PMID: 32691695 Free PMC article.
Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses.
Sperk M, van Domselaar R, Rodriguez JE, Mikaeloff F, Sá Vinhas B, Saccon E, Sönnerborg A, Singh K, Gupta S, Végvári Á, Neogi U. Sperk M, et al. Among authors: gupta s. J Proteome Res. 2020 Nov 6;19(11):4259-4274. doi: 10.1021/acs.jproteome.0c00380. Epub 2020 Oct 23. J Proteome Res. 2020. PMID: 33095583 Free PMC article. Review.
Cell-type-resolved quantitative proteomics map of interferon response against SARS-CoV-2.
Saccon E, Chen X, Mikaeloff F, Rodriguez JE, Szekely L, Vinhas BS, Krishnan S, Byrareddy SN, Frisan T, Végvári Á, Mirazimi A, Neogi U, Gupta S. Saccon E, et al. Among authors: gupta s. iScience. 2021 May 21;24(5):102420. doi: 10.1016/j.isci.2021.102420. Epub 2021 Apr 20. iScience. 2021. PMID: 33898942 Free PMC article.
Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells.
Chen X, Saccon E, Appelberg KS, Mikaeloff F, Rodriguez JE, Vinhas BS, Frisan T, Végvári Á, Mirazimi A, Neogi U, Gupta S. Chen X, et al. Among authors: gupta s. Cell Death Discov. 2021 May 18;7(1):114. doi: 10.1038/s41420-021-00487-z. Cell Death Discov. 2021. PMID: 34006825 Free PMC article.
Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication.
Krishnan S, Nordqvist H, Ambikan AT, Gupta S, Sperk M, Svensson-Akusjärvi S, Mikaeloff F, Benfeitas R, Saccon E, Ponnan SM, Rodriguez JE, Nikouyan N, Odeh A, Ahlén G, Asghar M, Sällberg M, Vesterbacka J, Nowak P, Végvári Á, Sönnerborg A, Treutiger CJ, Neogi U. Krishnan S, et al. Among authors: gupta s. Mol Cell Proteomics. 2021;20:100159. doi: 10.1016/j.mcpro.2021.100159. Epub 2021 Oct 5. Mol Cell Proteomics. 2021. PMID: 34619366 Free PMC article.
Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling.
Akusjärvi SS, Ambikan AT, Krishnan S, Gupta S, Sperk M, Végvári Á, Mikaeloff F, Healy K, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Akusjärvi SS, et al. Among authors: gupta s. iScience. 2021 Dec 10;25(1):103607. doi: 10.1016/j.isci.2021.103607. eCollection 2022 Jan 21. iScience. 2021. PMID: 35005552 Free PMC article.
Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals.
Svensson Akusjärvi S, Krishnan S, Jütte BB, Ambikan AT, Gupta S, Rodriguez JE, Végvári Á, Sperk M, Nowak P, Vesterbacka J, Svensson JP, Sönnerborg A, Neogi U. Svensson Akusjärvi S, et al. Among authors: gupta s. Commun Biol. 2022 Apr 13;5(1):357. doi: 10.1038/s42003-022-03315-x. Commun Biol. 2022. PMID: 35418589 Free PMC article.
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.
Ambikan AT, Yang H, Krishnan S, Svensson Akusjärvi S, Gupta S, Lourda M, Sperk M, Arif M, Zhang C, Nordqvist H, Ponnan SM, Sönnerborg A, Treutiger CJ, O'Mahony L, Mardinoglu A, Benfeitas R, Neogi U. Ambikan AT, et al. Among authors: gupta s. Cell Syst. 2022 Aug 17;13(8):665-681.e4. doi: 10.1016/j.cels.2022.06.006. Epub 2022 Jul 8. Cell Syst. 2022. PMID: 35933992 Free PMC article.
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