Baker D - Search Results

1

Generation of ordered protein assemblies using rigid three-body fusion.

Vulovic I, Yao Q, Park YJ, Courbet A, Norris A, Busch F, Sahasrabuddhe A, Merten H, Sahtoe DD, Ueda G, Fallas JA, Weaver SJ, Hsia Y, Langan RA, Plückthun A, Wysocki VH, Veesler D, Jensen GJ, Baker D. Vulovic I, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2015037118. doi: 10.1073/pnas.2015037118. Proc Natl Acad Sci U S A. 2021. PMID: 34074752 Free PMC article.

2

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability.

Scalley ML, Baker D. Scalley ML, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10636-40. doi: 10.1073/pnas.94.20.10636. Proc Natl Acad Sci U S A. 1997. PMID: 9380687 Free PMC article.

3

The sequences of small proteins are not extensively optimized for rapid folding by natural selection.

Kim DE, Gu H, Baker D. Kim DE, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4982-6. doi: 10.1073/pnas.95.9.4982. Proc Natl Acad Sci U S A. 1998. PMID: 9560214 Free PMC article.

4

Clustering of low-energy conformations near the native structures of small proteins.

Shortle D, Simons KT, Baker D. Shortle D, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11158-62. doi: 10.1073/pnas.95.19.11158. Proc Natl Acad Sci U S A. 1998. PMID: 9736706 Free PMC article.

5

Limited internal friction in the rate-limiting step of a two-state protein folding reaction.

Plaxco KW, Baker D. Plaxco KW, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13591-6. doi: 10.1073/pnas.95.23.13591. Proc Natl Acad Sci U S A. 1998. PMID: 9811844 Free PMC article.

6

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Alm E, Baker D. Alm E, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11305-10. doi: 10.1073/pnas.96.20.11305. Proc Natl Acad Sci U S A. 1999. PMID: 10500172 Free PMC article.

7

Native protein sequences are close to optimal for their structures.

Kuhlman B, Baker D. Kuhlman B, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2000 Sep 12;97(19):10383-8. doi: 10.1073/pnas.97.19.10383. Proc Natl Acad Sci U S A. 2000. PMID: 10984534 Free PMC article.

8

Conversion of monomeric protein L to an obligate dimer by computational protein design.

Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D. Kuhlman B, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10687-91. doi: 10.1073/pnas.181354398. Epub 2001 Aug 28. Proc Natl Acad Sci U S A. 2001. PMID: 11526208 Free PMC article.

9

A simple physical model for binding energy hot spots in protein-protein complexes.

Kortemme T, Baker D. Kortemme T, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14116-21. doi: 10.1073/pnas.202485799. Epub 2002 Oct 15. Proc Natl Acad Sci U S A. 2002. PMID: 12381794 Free PMC article.

10

Coupled prediction of protein secondary and tertiary structure.

Meiler J, Baker D. Meiler J, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12105-10. doi: 10.1073/pnas.1831973100. Epub 2003 Oct 3. Proc Natl Acad Sci U S A. 2003. PMID: 14528006 Free PMC article.

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