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Aquarium: open-source laboratory software for design, execution and data management.
Vrana J, de Lange O, Yang Y, Newman G, Saleem A, Miller A, Cordray C, Halabiya S, Parks M, Lopez E, Goldberg S, Keller B, Strickland D, Klavins E. Vrana J, et al. Among authors: strickland d. Synth Biol (Oxf). 2021 Jan 30;6(1):ysab006. doi: 10.1093/synbio/ysab006. eCollection 2021. Synth Biol (Oxf). 2021. PMID: 34151028 Free PMC article.
Perturbing the energy landscape for improved packing during computational protein design.
Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, Kuhlman B. Maguire JB, et al. Among authors: strickland d. Proteins. 2021 Apr;89(4):436-449. doi: 10.1002/prot.26030. Epub 2020 Dec 11. Proteins. 2021. PMID: 33249652 Free PMC article.
Benchmarking of optical dimerizer systems.
Pathak GP, Strickland D, Vrana JD, Tucker CL. Pathak GP, et al. Among authors: strickland d. ACS Synth Biol. 2014 Nov 21;3(11):832-8. doi: 10.1021/sb500291r. Epub 2014 Nov 5. ACS Synth Biol. 2014. PMID: 25350266 Free PMC article.
Large-scale design and refinement of stable proteins using sequence-only models.
Singer JM, Novotney S, Strickland D, Haddox HK, Leiby N, Rocklin GJ, Chow CM, Roy A, Bera AK, Motta FC, Cao L, Strauch EM, Chidyausiku TM, Ford A, Ho E, Zaitzeff A, Mackenzie CO, Eramian H, DiMaio F, Grigoryan G, Vaughn M, Stewart LJ, Baker D, Klavins E. Singer JM, et al. Among authors: strickland d. PLoS One. 2022 Mar 14;17(3):e0265020. doi: 10.1371/journal.pone.0265020. eCollection 2022. PLoS One. 2022. PMID: 35286324 Free PMC article.
Optical Control of Peroxisomal Trafficking.
Spiltoir JI, Strickland D, Glotzer M, Tucker CL. Spiltoir JI, et al. Among authors: strickland d. ACS Synth Biol. 2016 Jul 15;5(7):554-60. doi: 10.1021/acssynbio.5b00144. Epub 2015 Nov 2. ACS Synth Biol. 2016. PMID: 26513473 Free PMC article.
Rationally improving LOV domain-based photoswitches.
Strickland D, Yao X, Gawlak G, Rosen MK, Gardner KH, Sosnick TR. Strickland D, et al. Nat Methods. 2010 Aug;7(8):623-6. doi: 10.1038/nmeth.1473. Epub 2010 Jun 20. Nat Methods. 2010. PMID: 20562867 Free PMC article.
Light-activated DNA binding in a designed allosteric protein.
Strickland D, Moffat K, Sosnick TR. Strickland D, et al. Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10709-14. doi: 10.1073/pnas.0709610105. Epub 2008 Jul 30. Proc Natl Acad Sci U S A. 2008. PMID: 18667691 Free PMC article.
603 results