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Detection and characterization of lung cancer using cell-free DNA fragmentomes.
Mathios D, Johansen JS, Cristiano S, Medina JE, Phallen J, Larsen KR, Bruhm DC, Niknafs N, Ferreira L, Adleff V, Chiao JY, Leal A, Noe M, White JR, Arun AS, Hruban C, Annapragada AV, Jensen SØ, Ørntoft MW, Madsen AH, Carvalho B, de Wit M, Carey J, Dracopoli NC, Maddala T, Fang KC, Hartman AR, Forde PM, Anagnostou V, Brahmer JR, Fijneman RJA, Nielsen HJ, Meijer GA, Andersen CL, Mellemgaard A, Bojesen SE, Scharpf RB, Velculescu VE. Mathios D, et al. Among authors: annapragada av. Nat Commun. 2021 Aug 20;12(1):5060. doi: 10.1038/s41467-021-24994-w. Nat Commun. 2021. PMID: 34417454 Free PMC article.
Detecting Liver Cancer Using Cell-Free DNA Fragmentomes.
Foda ZH, Annapragada AV, Boyapati K, Bruhm DC, Vulpescu NA, Medina JE, Mathios D, Cristiano S, Niknafs N, Luu HT, Goggins MG, Anders RA, Sun J, Meta SH, Thomas DL, Kirk GD, Adleff V, Phallen J, Scharpf RB, Kim AK, Velculescu VE. Foda ZH, et al. Among authors: annapragada av. Cancer Discov. 2023 Mar 1;13(3):616-631. doi: 10.1158/2159-8290.CD-22-0659. Cancer Discov. 2023. PMID: 36399356 Free PMC article.
Single-molecule genome-wide mutation profiles of cell-free DNA for non-invasive detection of cancer.
Bruhm DC, Mathios D, Foda ZH, Annapragada AV, Medina JE, Adleff V, Chiao EJ, Ferreira L, Cristiano S, White JR, Mazzilli SA, Billatos E, Spira A, Zaidi AH, Mueller J, Kim AK, Anagnostou V, Phallen J, Scharpf RB, Velculescu VE. Bruhm DC, et al. Among authors: annapragada av. Nat Genet. 2023 Aug;55(8):1301-1310. doi: 10.1038/s41588-023-01446-3. Epub 2023 Jul 27. Nat Genet. 2023. PMID: 37500728 Free PMC article.
Genome-wide repeat landscapes in cancer and cell-free DNA.
Annapragada AV, Niknafs N, White JR, Bruhm DC, Cherry C, Medina JE, Adleff V, Hruban C, Mathios D, Foda ZH, Phallen J, Scharpf RB, Velculescu VE. Annapragada AV, et al. Sci Transl Med. 2024 Mar 13;16(738):eadj9283. doi: 10.1126/scitranslmed.adj9283. Epub 2024 Mar 13. Sci Transl Med. 2024. PMID: 38478628 Free PMC article.
DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation.
Noë M, Mathios D, Annapragada AV, Koul S, Foda ZH, Medina JE, Cristiano S, Cherry C, Bruhm DC, Niknafs N, Adleff V, Ferreira L, Easwaran H, Baylin S, Phallen J, Scharpf RB, Velculescu VE. Noë M, et al. Among authors: annapragada av. Nat Commun. 2024 Aug 6;15(1):6690. doi: 10.1038/s41467-024-50850-8. Nat Commun. 2024. PMID: 39107309 Free PMC article.
Early detection of ovarian cancer using cell-free DNA fragmentomes and protein biomarkers.
Medina JE, Annapragada AV, Lof P, Short S, Bartolomucci AL, Mathios D, Koul S, Niknafs N, Noe M, Foda ZH, Bruhm DC, Hruban C, Vulpescu NA, Jung E, Dua R, Canzoniero JV, Cristiano S, Adleff V, Symecko H, van den Broek D, Sokoll LJ, Baylin SB, Press MF, Slamon DJ, Konecny GE, Therkildsen C, Carvalho B, Meijer GA, Andersen CL, Domchek SM, Drapkin R, Scharpf RB, Phallen J, Lok CAR, Velculescu VE. Medina JE, et al. Among authors: annapragada av. Cancer Discov. 2024 Sep 30. doi: 10.1158/2159-8290.CD-24-0393. Online ahead of print. Cancer Discov. 2024. PMID: 39345137
Variation in SARS-CoV-2 outbreaks across sub-Saharan Africa.
Rice BL, Annapragada A, Baker RE, Bruijning M, Dotse-Gborgbortsi W, Mensah K, Miller IF, Motaze NV, Raherinandrasana A, Rajeev M, Rakotonirina J, Ramiadantsoa T, Rasambainarivo F, Yu W, Grenfell BT, Tatem AJ, Metcalf CJE. Rice BL, et al. Nat Med. 2021 Mar;27(3):447-453. doi: 10.1038/s41591-021-01234-8. Epub 2021 Feb 2. Nat Med. 2021. PMID: 33531710 Free PMC article.
High variation expected in the pace and burden of SARS-CoV-2 outbreaks across sub-Saharan Africa.
Rice BL, Annapragada A, Baker RE, Bruijning M, Dotse-Gborgbortsi W, Mensah K, Miller IF, Motaze NV, Raherinandrasana A, Rajeev M, Rakotonirina J, Ramiadantsoa T, Rasambainarivo F, Yu W, Grenfell BT, Tatem AJ, Metcalf CJE. Rice BL, et al. medRxiv [Preprint]. 2020 Jul 29:2020.07.23.20161208. doi: 10.1101/2020.07.23.20161208. medRxiv. 2020. Update in: Nat Med. 2021 Mar;27(3):447-453. doi: 10.1038/s41591-021-01234-8 PMID: 32743598 Free PMC article. Updated. Preprint.
Study Protocol: A Cross-Sectional Examination of Socio-Demographic and Ecological Determinants of Nutrition and Disease Across Madagascar.
Golden CD, Rice BL, Randriamady HJ, Vonona AM, Randrianasolo JF, Tafangy AN, Andrianantenaina MY, Arisco NJ, Emile GN, Lainandrasana F, Mahonjolaza RFF, Raelson HP, Rakotoarilalao VR, Rakotomalala AANA, Rasamison AD, Mahery R, Tantely ML, Girod R, Annapragada A, Wesolowski A, Winter A, Hartl DL, Hazen J, Metcalf CJE. Golden CD, et al. Front Public Health. 2020 Sep 17;8:500. doi: 10.3389/fpubh.2020.00500. eCollection 2020. Front Public Health. 2020. PMID: 33042943 Free PMC article.
62 results