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Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics.
Thorgersen MP, Xue J, Majumder ELW, Trotter VV, Ge X, Poole FL 2nd, Owens TK, Lui LM, Nielsen TN, Arkin AP, Deutschbauer AM, Siuzdak G, Adams MWW. Thorgersen MP, et al. Among authors: majumder elw. Appl Environ Microbiol. 2021 Oct 14;87(21):e0103721. doi: 10.1128/AEM.01037-21. Epub 2021 Aug 25. Appl Environ Microbiol. 2021. PMID: 34432491 Free PMC article.
Systems biology guided by XCMS Online metabolomics.
Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G. Huan T, et al. Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. Nat Methods. 2017. PMID: 28448069 Free PMC article. No abstract available.
Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.
Moon JW, Paradis CJ, Joyner DC, von Netzer F, Majumder EL, Dixon ER, Podar M, Ge X, Walian PJ, Smith HJ, Wu X, Zane GM, Walker KF, Thorgersen MP, Poole Ii FL, Lui LM, Adams BG, De León KB, Brewer SS, Williams DE, Lowe KA, Rodriguez M Jr, Mehlhorn TL, Pfiffner SM, Chakraborty R, Arkin AP, Wall JD, Fields MW, Adams MWW, Stahl DA, Elias DA, Hazen TC. Moon JW, et al. Chemosphere. 2020 Sep;255:126951. doi: 10.1016/j.chemosphere.2020.126951. Epub 2020 May 10. Chemosphere. 2020. PMID: 32417512 Free article.
Cognitive analysis of metabolomics data for systems biology.
Majumder EL, Billings EM, Benton HP, Martin RL, Palermo A, Guijas C, Rinschen MM, Domingo-Almenara X, Montenegro-Burke JR, Tagtow BA, Plumb RS, Siuzdak G. Majumder EL, et al. Nat Protoc. 2021 Mar;16(3):1376-1418. doi: 10.1038/s41596-020-00455-4. Epub 2021 Jan 22. Nat Protoc. 2021. PMID: 33483720 Free PMC article.
Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification.
Otwell AE, Carr AV, Majumder ELW, Ruiz MK, Wilpiszeski RL, Hoang LT, Webb B, Turkarslan S, Gibbons SM, Elias DA, Stahl DA, Siuzdak G, Baliga NS. Otwell AE, et al. Among authors: majumder elw. mSystems. 2021 Feb 9;6(1):e01025-20. doi: 10.1128/mSystems.01025-20. mSystems. 2021. PMID: 33563788 Free PMC article.
Metabolic adaptation to calorie restriction.
Guijas C, Montenegro-Burke JR, Cintron-Colon R, Domingo-Almenara X, Sanchez-Alavez M, Aguirre CA, Shankar K, Majumder EL, Billings E, Conti B, Siuzdak G. Guijas C, et al. Sci Signal. 2020 Sep 8;13(648):eabb2490. doi: 10.1126/scisignal.abb2490. Sci Signal. 2020. PMID: 32900879 Free PMC article.
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