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SNPxE: SNP-environment interaction pattern identifier.
Lin HY, Huang PY, Tseng TS, Park JY. Lin HY, et al. Among authors: huang py. BMC Bioinformatics. 2021 Sep 7;22(1):425. doi: 10.1186/s12859-021-04326-x. BMC Bioinformatics. 2021. PMID: 34493206 Free PMC article.
SNP interaction pattern identifier (SIPI): an intensive search for SNP-SNP interaction patterns.
Lin HY, Chen DT, Huang PY, Liu YH, Ochoa A, Zabaleta J, Mercante DE, Fang Z, Sellers TA, Pow-Sang JM, Cheng CH, Eeles R, Easton D, Kote-Jarai Z, Amin Al Olama A, Benlloch S, Muir K, Giles GG, Wiklund F, Gronberg H, Haiman CA, Schleutker J, Nordestgaard BG, Travis RC, Hamdy F, Pashayan N, Khaw KT, Stanford JL, Blot WJ, Thibodeau SN, Maier C, Kibel AS, Cybulski C, Cannon-Albright L, Brenner H, Kaneva R, Batra J, Teixeira MR, Pandha H, Lu YJ; PRACTICAL Consortium; Park JY. Lin HY, et al. Among authors: huang py. Bioinformatics. 2017 Mar 15;33(6):822-833. doi: 10.1093/bioinformatics/btw762. Bioinformatics. 2017. PMID: 28039167 Free PMC article.
A Bayesian pick-the-winner design in a randomized phase II clinical trial.
Chen DT, Huang PY, Lin HY, Chiappori AA, Gabrilovich DI, Haura EB, Antonia SJ, Gray JE. Chen DT, et al. Among authors: huang py. Oncotarget. 2017 Jul 7;8(51):88376-88385. doi: 10.18632/oncotarget.19088. eCollection 2017 Oct 24. Oncotarget. 2017. PMID: 29179442 Free PMC article.
AA9int: SNP interaction pattern search using non-hierarchical additive model set.
Lin HY, Huang PY, Chen DT, Tung HY, Sellers TA, Pow-Sang JM, Eeles R, Easton D, Kote-Jarai Z, Amin Al Olama A, Benlloch S, Muir K, Giles GG, Wiklund F, Gronberg H, Haiman CA, Schleutker J, Nordestgaard BG, Travis RC, Hamdy F, Neal DE, Pashayan N, Khaw KT, Stanford JL, Blot WJ, Thibodeau SN, Maier C, Kibel AS, Cybulski C, Cannon-Albright L, Brenner H, Kaneva R, Batra J, Teixeira MR, Pandha H, Lu YJ; PRACTICAL Consortium; Park JY. Lin HY, et al. Among authors: huang py. Bioinformatics. 2018 Dec 15;34(24):4141-4150. doi: 10.1093/bioinformatics/bty461. Bioinformatics. 2018. PMID: 29878078 Free PMC article.
KLK3 SNP-SNP interactions for prediction of prostate cancer aggressiveness.
Lin HY, Huang PY, Cheng CH, Tung HY, Fang Z, Berglund AE, Chen A, French-Kwawu J, Harris D, Pow-Sang J, Yamoah K, Cleveland JL, Awasthi S, Rounbehler RJ, Gerke T, Dhillon J, Eeles R, Kote-Jarai Z, Muir K; UKGPCS collaborators; Schleutker J, Pashayan N; APCB (Australian Prostate Cancer BioResource); Neal DE, Nielsen SF, Nordestgaard BG, Gronberg H, Wiklund F, Giles GG, Haiman CA, Travis RC, Stanford JL, Kibel AS, Cybulski C, Khaw KT, Maier C, Thibodeau SN, Teixeira MR, Cannon-Albright L, Brenner H, Kaneva R, Pandha H; PRACTICAL consortium; Srinivasan S, Clements J, Batra J, Park JY. Lin HY, et al. Among authors: huang py. Sci Rep. 2021 Apr 29;11(1):9264. doi: 10.1038/s41598-021-85169-7. Sci Rep. 2021. PMID: 33927218 Free PMC article.
Cluster effect for SNP-SNP interaction pairs for predicting complex traits.
Lin HY, Mazumder H, Sarkar I, Huang PY, Eeles RA, Kote-Jarai Z, Muir KR; UKGPCS collaborators; Schleutker J, Pashayan N, Batra J; APCB (Australian Prostate Cancer BioResource); Neal DE, Nielsen SF, Nordestgaard BG, Grönberg H, Wiklund F, MacInnis RJ, Haiman CA, Travis RC, Stanford JL, Kibel AS, Cybulski C, Khaw KT, Maier C, Thibodeau SN, Teixeira MR, Cannon-Albright L, Brenner H, Kaneva R, Pandha H; PRACTICAL consortium; Park JY. Lin HY, et al. Among authors: huang py. Sci Rep. 2024 Aug 12;14(1):18677. doi: 10.1038/s41598-024-66311-7. Sci Rep. 2024. PMID: 39134575 Free PMC article.
Sparse principal component analysis in cancer research.
Hsu YL, Huang PY, Chen DT. Hsu YL, et al. Among authors: huang py. Transl Cancer Res. 2014 Jun;3(3):182-190. doi: 10.3978/j.issn.2218-676X.2014.05.06. Transl Cancer Res. 2014. PMID: 26719835 Free PMC article.
569 results