Zhou Y - Search Results

1

Structure-aware protein-protein interaction site prediction using deep graph convolutional network.

Yuan Q, Chen J, Zhao H, Zhou Y, Yang Y. Yuan Q, et al. Among authors: zhou y. Bioinformatics. 2021 Dec 22;38(1):125-132. doi: 10.1093/bioinformatics/btab643. Bioinformatics. 2021. PMID: 34498061

2

Specific interactions for ab initio folding of protein terminal regions with secondary structures.

Yang Y, Zhou Y. Yang Y, et al. Among authors: zhou y. Proteins. 2008 Aug;72(2):793-803. doi: 10.1002/prot.21968. Proteins. 2008. PMID: 18260109

3

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions.

Yang Y, Zhou Y. Yang Y, et al. Among authors: zhou y. Protein Sci. 2008 Jul;17(7):1212-9. doi: 10.1110/ps.033480.107. Epub 2008 May 9. Protein Sci. 2008. PMID: 18469178 Free PMC article.

4

An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.

Xu B, Yang Y, Liang H, Zhou Y. Xu B, et al. Among authors: zhou y. Proteins. 2009 Aug 15;76(3):718-30. doi: 10.1002/prot.22384. Proteins. 2009. PMID: 19274740 Free PMC article.

5

Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction.

Faraggi E, Yang Y, Zhang S, Zhou Y. Faraggi E, et al. Among authors: zhou y. Structure. 2009 Nov 11;17(11):1515-27. doi: 10.1016/j.str.2009.09.006. Structure. 2009. PMID: 19913486 Free PMC article.

6

Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: zhou y. Bioinformatics. 2010 Aug 1;26(15):1857-63. doi: 10.1093/bioinformatics/btq295. Epub 2010 Jun 4. Bioinformatics. 2010. PMID: 20525822 Free PMC article.

7

Improving computational protein design by using structure-derived sequence profile.

Dai L, Yang Y, Kim HR, Zhou Y. Dai L, et al. Among authors: zhou y. Proteins. 2010 Aug 1;78(10):2338-48. doi: 10.1002/prot.22746. Proteins. 2010. PMID: 20544969 Free PMC article.

8

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: zhou y. Nucleic Acids Res. 2011 Apr;39(8):3017-25. doi: 10.1093/nar/gkq1266. Epub 2010 Dec 22. Nucleic Acids Res. 2011. PMID: 21183467 Free PMC article.

9

Trends in template/fragment-free protein structure prediction.

Zhou Y, Duan Y, Yang Y, Faraggi E, Lei H. Zhou Y, et al. Theor Chem Acc. 2011 Jan;128(1):3-16. doi: 10.1007/s00214-010-0799-2. Epub 2010 Sep 1. Theor Chem Acc. 2011. PMID: 21423322 Free PMC article.

10

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.

Yang Y, Faraggi E, Zhao H, Zhou Y. Yang Y, et al. Among authors: zhou y. Bioinformatics. 2011 Aug 1;27(15):2076-82. doi: 10.1093/bioinformatics/btr350. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666270 Free PMC article.

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