Kavakli IH - Search Results

1

Structure-based design and classifications of small molecules regulating the circadian rhythm period.

Gul S, Rahim F, Isin S, Yilmaz F, Ozturk N, Turkay M, Kavakli IH. Gul S, et al. Among authors: kavakli ih. Sci Rep. 2021 Sep 16;11(1):18510. doi: 10.1038/s41598-021-97962-5. Sci Rep. 2021. PMID: 34531414 Free PMC article.

2

Classification of drug molecules considering their IC50 values using mixed-integer linear programming based hyper-boxes method.

Armutlu P, Ozdemir ME, Uney-Yuksektepe F, Kavakli IH, Turkay M. Armutlu P, et al. Among authors: kavakli ih. BMC Bioinformatics. 2008 Oct 3;9:411. doi: 10.1186/1471-2105-9-411. BMC Bioinformatics. 2008. PMID: 18834515 Free PMC article.

3

Classification of cytochrome P450 inhibitors with respect to binding free energy and pIC50 using common molecular descriptors.

Dagliyan O, Kavakli IH, Turkay M. Dagliyan O, et al. Among authors: kavakli ih. J Chem Inf Model. 2009 Oct;49(10):2403-11. doi: 10.1021/ci900247t. J Chem Inf Model. 2009. PMID: 19777996

4

Identification of two amino acids in the C-terminal domain of mouse CRY2 essential for PER2 interaction.

Ozber N, Baris I, Tatlici G, Gur I, Kilinc S, Unal EB, Kavakli IH. Ozber N, et al. Among authors: kavakli ih. BMC Mol Biol. 2010 Sep 14;11:69. doi: 10.1186/1471-2199-11-69. BMC Mol Biol. 2010. PMID: 20840750 Free PMC article.

5

Optimization based tumor classification from microarray gene expression data.

Dagliyan O, Uney-Yuksektepe F, Kavakli IH, Turkay M. Dagliyan O, et al. Among authors: kavakli ih. PLoS One. 2011 Feb 4;6(2):e14579. doi: 10.1371/journal.pone.0014579. PLoS One. 2011. PMID: 21326602 Free PMC article.

6

Structure based discovery of small molecules to regulate the activity of human insulin degrading enzyme.

Çakir B, Dağliyan O, Dağyildiz E, Bariş İ, Kavakli IH, Kizilel S, Türkay M. Çakir B, et al. Among authors: kavakli ih. PLoS One. 2012;7(2):e31787. doi: 10.1371/journal.pone.0031787. Epub 2012 Feb 15. PLoS One. 2012. PMID: 22355395 Free PMC article.

7

Glu-370 in the large subunit influences the substrate binding, allosteric, and heat stability properties of potato ADP-glucose pyrophosphorylase.

Seferoglu AB, Gul S, Dikbas UM, Baris I, Koper K, Caliskan M, Cevahir G, Kavakli IH. Seferoglu AB, et al. Among authors: kavakli ih. Plant Sci. 2016 Nov;252:125-132. doi: 10.1016/j.plantsci.2016.07.007. Epub 2016 Jul 21. Plant Sci. 2016. PMID: 27717448

8

The Photolyase/Cryptochrome Family of Proteins as DNA Repair Enzymes and Transcriptional Repressors.

Kavakli IH, Baris I, Tardu M, Gül Ş, Öner H, Çal S, Bulut S, Yarparvar D, Berkel Ç, Ustaoğlu P, Aydın C. Kavakli IH, et al. Photochem Photobiol. 2017 Jan;93(1):93-103. doi: 10.1111/php.12669. Epub 2017 Jan 9. Photochem Photobiol. 2017. PMID: 28067410 Review.

9

MerR and ChrR mediate blue light induced photo-oxidative stress response at the transcriptional level in Vibrio cholerae.

Tardu M, Bulut S, Kavakli IH. Tardu M, et al. Among authors: kavakli ih. Sci Rep. 2017 Jan 18;7:40817. doi: 10.1038/srep40817. Sci Rep. 2017. PMID: 28098242 Free PMC article.

10

DNA repair by photolyases.

Kavakli IH, Ozturk N, Gul S. Kavakli IH, et al. Adv Protein Chem Struct Biol. 2019;115:1-19. doi: 10.1016/bs.apcsb.2018.10.003. Epub 2018 Dec 20. Adv Protein Chem Struct Biol. 2019. PMID: 30798929 Review.

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