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Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.
Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, Gelmon K, Chia S, Mar C, Wan A, Laks E, Biele J, Shumansky K, Rosner J, McPherson A, Nielsen C, Roth AJ, Lefebvre C, Bashashati A, de Souza C, Siu C, Aniba R, Brimhall J, Oloumi A, Osako T, Bruna A, Sandoval JL, Algara T, Greenwood W, Leung K, Cheng H, Xue H, Wang Y, Lin D, Mungall AJ, Moore R, Zhao Y, Lorette J, Nguyen L, Huntsman D, Eaves CJ, Hansen C, Marra MA, Caldas C, Shah SP, Aparicio S. Eirew P, et al. Among authors: farahani h. Nature. 2015 Feb 19;518(7539):422-6. doi: 10.1038/nature13952. Epub 2014 Nov 26. Nature. 2015. PMID: 25470049 Free PMC article.
Synthesis of diagnostic quality cancer pathology images by generative adversarial networks.
Levine AB, Peng J, Farnell D, Nursey M, Wang Y, Naso JR, Ren H, Farahani H, Chen C, Chiu D, Talhouk A, Sheffield B, Riazy M, Ip PP, Parra-Herran C, Mills A, Singh N, Tessier-Cloutier B, Salisbury T, Lee J, Salcudean T, Jones SJ, Huntsman DG, Gilks CB, Yip S, Bashashati A. Levine AB, et al. Among authors: farahani h. J Pathol. 2020 Oct;252(2):178-188. doi: 10.1002/path.5509. Epub 2020 Sep 8. J Pathol. 2020. PMID: 32686118
VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology.
Nakhli R, Rich K, Zhang A, Darbandsari A, Shenasa E, Hadjifaradji A, Thiessen S, Milne K, Jones SJM, McAlpine JN, Nelson BH, Gilks CB, Farahani H, Bashashati A. Nakhli R, et al. Among authors: farahani h. Nat Commun. 2024 May 10;15(1):3942. doi: 10.1038/s41467-024-48062-1. Nat Commun. 2024. PMID: 38729933 Free PMC article.
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers.
Darbandsari A, Farahani H, Asadi M, Wiens M, Cochrane D, Khajegili Mirabadi A, Jamieson A, Farnell D, Ahmadvand P, Douglas M, Leung S, Abolmaesumi P, Jones SJM, Talhouk A, Kommoss S, Gilks CB, Huntsman DG, Singh N, McAlpine JN, Bashashati A. Darbandsari A, et al. Among authors: farahani h. Nat Commun. 2024 Jun 26;15(1):4973. doi: 10.1038/s41467-024-49017-2. Nat Commun. 2024. PMID: 38926357 Free PMC article.
Learning generalizable AI models for multi-center histopathology image classification.
Asadi-Aghbolaghi M, Darbandsari A, Zhang A, Contreras-Sanz A, Boschman J, Ahmadvand P, Köbel M, Farnell D, Huntsman DG, Churg A, Black PC, Wang G, Gilks CB, Farahani H, Bashashati A. Asadi-Aghbolaghi M, et al. Among authors: farahani h. NPJ Precis Oncol. 2024 Jul 19;8(1):151. doi: 10.1038/s41698-024-00652-4. NPJ Precis Oncol. 2024. PMID: 39030380 Free PMC article.
142 results