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Page 1
Flanker: a tool for comparative genomics of gene flanking regions.
Matlock W, Lipworth S, Constantinides B, Peto TEA, Walker AS, Crook D, Hopkins S, Shaw LP, Stoesser N. Matlock W, et al. Among authors: shaw lp. Microb Genom. 2021 Sep;7(9):000634. doi: 10.1099/mgen.0.000634. Microb Genom. 2021. PMID: 34559044 Free PMC article.
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study.
Doyle RM, O'Sullivan DM, Aller SD, Bruchmann S, Clark T, Coello Pelegrin A, Cormican M, Diez Benavente E, Ellington MJ, McGrath E, Motro Y, Phuong Thuy Nguyen T, Phelan J, Shaw LP, Stabler RA, van Belkum A, van Dorp L, Woodford N, Moran-Gilad J, Huggett JF, Harris KA. Doyle RM, et al. Among authors: shaw lp. Microb Genom. 2020 Feb;6(2):e000335. doi: 10.1099/mgen.0.000335. Epub 2020 Feb 12. Microb Genom. 2020. PMID: 32048983 Free PMC article.
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Bharucha T, Oeser C, Balloux F, Brown JR, Carbo EC, Charlett A, Chiu CY, Claas ECJ, de Goffau MC, de Vries JJC, Eloit M, Hopkins S, Huggett JF, MacCannell D, Morfopoulou S, Nath A, O'Sullivan DM, Reoma LB, Shaw LP, Sidorov I, Simner PJ, Van Tan L, Thomson EC, van Dorp L, Wilson MR, Breuer J, Field N. Bharucha T, et al. Among authors: shaw lp. Lancet Infect Dis. 2020 Oct;20(10):e251-e260. doi: 10.1016/S1473-3099(20)30199-7. Epub 2020 Aug 5. Lancet Infect Dis. 2020. PMID: 32768390 Free PMC article. Review.
Genomic network analysis of environmental and livestock F-type plasmid populations.
Matlock W, Chau KK, AbuOun M, Stubberfield E, Barker L, Kavanagh J, Pickford H, Gilson D, Smith RP, Gweon HS, Hoosdally SJ, Swann J, Sebra R, Bailey MJ, Peto TEA, Crook DW, Anjum MF, Read DS, Walker AS, Stoesser N, Shaw LP; REHAB consortium. Matlock W, et al. Among authors: shaw lp. ISME J. 2021 Aug;15(8):2322-2335. doi: 10.1038/s41396-021-00926-w. Epub 2021 Mar 1. ISME J. 2021. PMID: 33649550 Free PMC article.
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae.
Shaw LP, Chau KK, Kavanagh J, AbuOun M, Stubberfield E, Gweon HS, Barker L, Rodger G, Bowes MJ, Hubbard ATM, Pickford H, Swann J, Gilson D, Smith RP, Hoosdally SJ, Sebra R, Brett H, Peto TEA, Bailey MJ, Crook DW, Read DS, Anjum MF, Walker AS, Stoesser N; REHAB consortium. Shaw LP, et al. Sci Adv. 2021 Apr 9;7(15):eabe3868. doi: 10.1126/sciadv.abe3868. Print 2021 Apr. Sci Adv. 2021. PMID: 33837077 Free PMC article.
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N; REHAB consortium. Gweon HS, et al. Among authors: shaw lp. Environ Microbiome. 2019 Oct 24;14(1):7. doi: 10.1186/s40793-019-0347-1. Environ Microbiome. 2019. PMID: 33902704 Free PMC article.
A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage.
AbuOun M, Jones H, Stubberfield E, Gilson D, Shaw LP, Hubbard ATM, Chau KK, Sebra R, Peto TEA, Crook DW, Read DS, Gweon HS, Walker AS, Stoesser N, Smith RP, Anjum MF, On Behalf Of The Rehab Consortium. AbuOun M, et al. Among authors: shaw lp. Microb Genom. 2021 Oct;7(10):000630. doi: 10.1099/mgen.0.000630. Microb Genom. 2021. PMID: 34609275 Free PMC article.
Hospital outbreak of carbapenem-resistant Enterobacterales associated with a blaOXA-48 plasmid carried mostly by Escherichia coli ST399.
Ledda A, Cummins M, Shaw LP, Jauneikaite E, Cole K, Lasalle F, Barry D, Turton J, Rosmarin C, Anaraki S, Wareham D, Stoesser N, Paul J, Manuel R, Cherian BP, Didelot X. Ledda A, et al. Among authors: shaw lp. Microb Genom. 2022 Apr;8(4):000675. doi: 10.1099/mgen.0.000675. Microb Genom. 2022. PMID: 35442183 Free PMC article.
49 results