Basu S - Search Results

1

RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data.

Bandyopadhyay SS, Halder AK, Zaręba-Kozioł M, Bartkowiak-Kaczmarek A, Dutta A, Chatterjee P, Nasipuri M, Wójtowicz T, Wlodarczyk J, Basu S. Bandyopadhyay SS, et al. Among authors: basu s. Int J Mol Sci. 2021 Sep 14;22(18):9901. doi: 10.3390/ijms22189901. Int J Mol Sci. 2021. PMID: 34576064 Free PMC article.

2

PPI_SVM: prediction of protein-protein interactions using machine learning, domain-domain affinities and frequency tables.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. Among authors: basu s. Cell Mol Biol Lett. 2011 Jun;16(2):264-78. doi: 10.2478/s11658-011-0008-x. Epub 2011 Mar 20. Cell Mol Biol Lett. 2011. PMID: 21442443 Free PMC article.

3

PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. Among authors: basu s. J Mol Model. 2011 Sep;17(9):2191-201. doi: 10.1007/s00894-011-1102-8. Epub 2011 May 19. J Mol Model. 2011. PMID: 21594694 Free PMC article.

4

FunPred-1: protein function prediction from a protein interaction network using neighborhood analysis.

Saha S, Chatterjee P, Basu S, Kundu M, Nasipuri M. Saha S, et al. Among authors: basu s. Cell Mol Biol Lett. 2014 Dec;19(4):675-91. doi: 10.2478/s11658-014-0221-5. Epub 2014 Nov 25. Cell Mol Biol Lett. 2014. PMID: 25424913 Free PMC article.

5

PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach.

Chatterjee P, Basu S, Zubek J, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. Among authors: basu s. J Mol Model. 2016 Apr;22(4):72. doi: 10.1007/s00894-016-2933-0. Epub 2016 Mar 11. J Mol Model. 2016. PMID: 26969678 Free PMC article.

6

2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity.

Basu S, Plewczynski D, Saha S, Roszkowska M, Magnowska M, Baczynska E, Wlodarczyk J. Basu S, et al. Bioinformatics. 2016 Aug 15;32(16):2490-8. doi: 10.1093/bioinformatics/btw172. Epub 2016 Apr 1. Bioinformatics. 2016. PMID: 27153678

7

A survey on Ebola genome and current trends in computational research on the Ebola virus.

Dutta P, Halder AK, Basu S, Kundu M. Dutta P, et al. Among authors: basu s. Brief Funct Genomics. 2018 Nov 26;17(6):374-380. doi: 10.1093/bfgp/elx020. Brief Funct Genomics. 2018. PMID: 28968729 Review.

8

Review of computational methods for virus-host protein interaction prediction: a case study on novel Ebola-human interactions.

Halder AK, Dutta P, Kundu M, Basu S, Nasipuri M. Halder AK, et al. Among authors: basu s. Brief Funct Genomics. 2018 Nov 26;17(6):381-391. doi: 10.1093/bfgp/elx026. Brief Funct Genomics. 2018. PMID: 29028879 Free PMC article. Review.

9

Analysis of protein targets in pathogen-host interaction in infectious diseases: a case study on Plasmodium falciparum and Homo sapiens interaction network.

Saha S, Sengupta K, Chatterjee P, Basu S, Nasipuri M. Saha S, et al. Among authors: basu s. Brief Funct Genomics. 2018 Nov 26;17(6):441-450. doi: 10.1093/bfgp/elx024. Brief Funct Genomics. 2018. PMID: 29028886 Review.

10

Quantitative 3-D morphometric analysis of individual dendritic spines.

Basu S, Saha PK, Roszkowska M, Magnowska M, Baczynska E, Das N, Plewczynski D, Wlodarczyk J. Basu S, et al. Sci Rep. 2018 Feb 23;8(1):3545. doi: 10.1038/s41598-018-21753-8. Sci Rep. 2018. PMID: 29476060 Free PMC article.

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