Papalopulu N - Search Results

1

Inferring kinetic parameters of oscillatory gene regulation from single cell time-series data.

Burton J, Manning CS, Rattray M, Papalopulu N, Kursawe J. Burton J, et al. Among authors: papalopulu n. J R Soc Interface. 2021 Sep;18(182):20210393. doi: 10.1098/rsif.2021.0393. Epub 2021 Sep 29. J R Soc Interface. 2021. PMID: 34583566 Free PMC article.

2

microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states.

Goodfellow M, Phillips NE, Manning C, Galla T, Papalopulu N. Goodfellow M, et al. Among authors: papalopulu n. Nat Commun. 2014 Mar 4;5:3399. doi: 10.1038/ncomms4399. Nat Commun. 2014. PMID: 24595054 Free PMC article.

3

Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation.

Phillips NE, Manning CS, Pettini T, Biga V, Marinopoulou E, Stanley P, Boyd J, Bagnall J, Paszek P, Spiller DG, White MR, Goodfellow M, Galla T, Rattray M, Papalopulu N. Phillips NE, et al. Among authors: papalopulu n. Elife. 2016 Oct 4;5:e16118. doi: 10.7554/eLife.16118. Elife. 2016. PMID: 27700985 Free PMC article.

4

Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes.

Phillips NE, Manning C, Papalopulu N, Rattray M. Phillips NE, et al. Among authors: papalopulu n. PLoS Comput Biol. 2017 May 11;13(5):e1005479. doi: 10.1371/journal.pcbi.1005479. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28493880 Free PMC article.

5

Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis.

Manning CS, Biga V, Boyd J, Kursawe J, Ymisson B, Spiller DG, Sanderson CM, Galla T, Rattray M, Papalopulu N. Manning CS, et al. Among authors: papalopulu n. Nat Commun. 2019 Jun 27;10(1):2835. doi: 10.1038/s41467-019-10734-8. Nat Commun. 2019. PMID: 31249377 Free PMC article.

6

Dynamic properties of noise and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator.

Soto X, Biga V, Kursawe J, Lea R, Doostdar P, Thomas R, Papalopulu N. Soto X, et al. Among authors: papalopulu n. EMBO J. 2020 Jun 17;39(12):e103558. doi: 10.15252/embj.2019103558. Epub 2020 May 12. EMBO J. 2020. PMID: 32395844 Free PMC article.

7

OscoNet: inferring oscillatory gene networks.

Cutillo L, Boukouvalas A, Marinopoulou E, Papalopulu N, Rattray M. Cutillo L, et al. Among authors: papalopulu n. BMC Bioinformatics. 2020 Aug 21;21(Suppl 10):351. doi: 10.1186/s12859-020-03561-y. BMC Bioinformatics. 2020. PMID: 32838730 Free PMC article.

8

A dynamic, spatially periodic, micro-pattern of HES5 underlies neurogenesis in the mouse spinal cord.

Biga V, Hawley J, Soto X, Johns E, Han D, Bennett H, Adamson AD, Kursawe J, Glendinning P, Manning CS, Papalopulu N. Biga V, et al. Among authors: papalopulu n. Mol Syst Biol. 2021 May;17(5):e9902. doi: 10.15252/msb.20209902. Mol Syst Biol. 2021. PMID: 34031978 Free PMC article.

9

Differential phase register of Hes1 oscillations with mitoses underlies cell-cycle heterogeneity in ER⁺ breast cancer cells.

Sabherwal N, Rowntree A, Marinopoulou E, Pettini T, Hourihane S, Thomas R, Soto X, Kursawe J, Papalopulu N. Sabherwal N, et al. Among authors: papalopulu n. Proc Natl Acad Sci U S A. 2021 Nov 9;118(45):e2113527118. doi: 10.1073/pnas.2113527118. Proc Natl Acad Sci U S A. 2021. PMID: 34725165 Free PMC article.

10

Dynamic switching of lateral inhibition spatial patterns.

Hawley J, Manning C, Biga V, Glendinning P, Papalopulu N. Hawley J, et al. Among authors: papalopulu n. J R Soc Interface. 2022 Aug;19(193):20220339. doi: 10.1098/rsif.2022.0339. Epub 2022 Aug 24. J R Soc Interface. 2022. PMID: 36000231 Free PMC article.

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