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Current progress and open challenges for applying deep learning across the biosciences.
Sapoval N, Aghazadeh A, Nute MG, Antunes DA, Balaji A, Baraniuk R, Barberan CJ, Dannenfelser R, Dun C, Edrisi M, Elworth RAL, Kille B, Kyrillidis A, Nakhleh L, Wolfe CR, Yan Z, Yao V, Treangen TJ. Sapoval N, et al. Among authors: yan z. Nat Commun. 2022 Apr 1;13(1):1728. doi: 10.1038/s41467-022-29268-7. Nat Commun. 2022. PMID: 35365602 Free PMC article. Review.
Complexity of avian evolution revealed by family-level genomes.
Stiller J, Feng S, Chowdhury AA, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, Cracraft J, Balaban M, Mai U, Chen G, Gao R, Zhou C, Xie Y, Huang Z, Cao Z, Yan Z, Ogilvie HA, Nakhleh L, Lindow B, Morel B, Fjeldså J, Hosner PA, da Fonseca RR, Petersen B, Tobias JA, Székely T, Kennedy JD, Reeve AH, Liker A, Stervander M, Antunes A, Tietze DT, Bertelsen MF, Lei F, Rahbek C, Graves GR, Schierup MH, Warnow T, Braun EL, Gilbert MTP, Jarvis ED, Mirarab S, Zhang G. Stiller J, et al. Among authors: yan z. Nature. 2024 May;629(8013):851-860. doi: 10.1038/s41586-024-07323-1. Epub 2024 Apr 1. Nature. 2024. PMID: 38560995 Free PMC article.
Polyphest: fast polyploid phylogeny estimation.
Yan Z, Cao Z, Nakhleh L. Yan Z, et al. Bioinformatics. 2024 Sep 1;40(Suppl 2):ii20-ii28. doi: 10.1093/bioinformatics/btae390. Bioinformatics. 2024. PMID: 39230710 Free PMC article.
Life Cycle Economic and Environmental Assessment for Emerging Heavy-Duty Truck Powertrain Technologies in China: A Comparative Study of Battery Electric, Fuel Cell Electric, and Hydrogen Combustion Engine Trucks.
Xue X, Yan Z, Prada DN, Jia G, Popuri SS, Vijayagopal R, Li Y, Sari RL, Liu C, He X, Amer AA. Xue X, et al. Among authors: yan z. Environ Sci Technol. 2025 Jan 17. doi: 10.1021/acs.est.4c11737. Online ahead of print. Environ Sci Technol. 2025. PMID: 39823566
11,382 results
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