Dean M - Search Results

1

Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers.

Fu X, Lei H, Tao Y, Heselmeyer-Haddad K, Torres I, Dean M, Ried T, Schwartz R. Fu X, et al. Among authors: dean m. J Comput Biol. 2021 Nov;28(11):1035-1051. doi: 10.1089/cmb.2021.0255. Epub 2021 Oct 5. J Comput Biol. 2021. PMID: 34612714 Free PMC article.

2

Tyramide signal amplification (TSA)-FISH applied to mapping PCR-labeled probes less than 1 kb in size.

Schriml LM, Padilla-Nash HM, Coleman A, Moen P, Nash WG, Menninger J, Jones G, Ried T, Dean M. Schriml LM, et al. Among authors: dean m. Biotechniques. 1999 Sep;27(3):608-13. doi: 10.2144/99273pf01. Biotechniques. 1999. PMID: 10489619 Free article.

3

Amplification of 4q21-q22 and the MXR gene in independently derived mitoxantrone-resistant cell lines.

Knutsen T, Rao VK, Ried T, Mickley L, Schneider E, Miyake K, Ghadimi BM, Padilla-Nash H, Pack S, Greenberger L, Cowan K, Dean M, Fojo T, Bates S. Knutsen T, et al. Among authors: dean m. Genes Chromosomes Cancer. 2000 Jan;27(1):110-6. Genes Chromosomes Cancer. 2000. PMID: 10564593

4

Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.

Lei H, Lyu B, Gertz EM, Schäffer AA, Shi X, Wu K, Li G, Xu L, Hou Y, Dean M, Schwartz R. Lei H, et al. Among authors: dean m. J Comput Biol. 2020 Apr;27(4):565-598. doi: 10.1089/cmb.2019.0302. Epub 2020 Mar 16. J Comput Biol. 2020. PMID: 32181683 Free PMC article.

5

Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.

Lei H, Gertz EM, Schäffer AA, Fu X, Tao Y, Heselmeyer-Haddad K, Torres I, Li G, Xu L, Hou Y, Wu K, Shi X, Dean M, Ried T, Schwartz R. Lei H, et al. Among authors: dean m. Bioinformatics. 2021 Dec 11;37(24):4704-4711. doi: 10.1093/bioinformatics/btab504. Bioinformatics. 2021. PMID: 34289030 Free PMC article.

6

Extrachromosomal Amplification of Human Papillomavirus Episomes Is a Mechanism of Cervical Carcinogenesis.

Rossi NM, Dai J, Xie Y, Wangsa D, Heselmeyer-Haddad K, Lou H, Boland JF, Yeager M, Orozco R, Freites EA, Mirabello L, Gharzouzi E, Dean M. Rossi NM, et al. Among authors: dean m. Cancer Res. 2023 Jun 2;83(11):1768-1781. doi: 10.1158/0008-5472.CAN-22-3030. Cancer Res. 2023. PMID: 36971511 Free PMC article.

7

Evolution of multiple cell clones over a 29-year period of a CLL patient.

Zhao Z, Goldin L, Liu S, Wu L, Zhou W, Lou H, Yu Q, Tsang SX, Jiang M, Li F, McMaster M, Li Y, Lin X, Wang Z, Xu L, Marti G, Li G, Wu K, Yeager M, Yang H, Xu X, Chanock SJ, Li B, Hou Y, Caporaso N, Dean M. Zhao Z, et al. Among authors: dean m. Nat Commun. 2016 Dec 16;7:13765. doi: 10.1038/ncomms13765. Nat Commun. 2016. PMID: 27982015 Free PMC article.

8

Embryonic liver developmental trajectory revealed by single-cell RNA sequencing in the Foxa2^eGFP mouse.

Mu T, Xu L, Zhong Y, Liu X, Zhao Z, Huang C, Lan X, Lufei C, Zhou Y, Su Y, Xu L, Jiang M, Zhou H, Lin X, Wu L, Peng S, Liu S, Brix S, Dean M, Dunn NR, Zaret KS, Fu XY, Hou Y. Mu T, et al. Among authors: dean m. Commun Biol. 2020 Nov 3;3(1):642. doi: 10.1038/s42003-020-01364-8. Commun Biol. 2020. PMID: 33144666 Free PMC article.

9

Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma.

Sun Y, Wu L, Zhong Y, Zhou K, Hou Y, Wang Z, Zhang Z, Xie J, Wang C, Chen D, Huang Y, Wei X, Shi Y, Zhao Z, Li Y, Guo Z, Yu Q, Xu L, Volpe G, Qiu S, Zhou J, Ward C, Sun H, Yin Y, Xu X, Wang X, Esteban MA, Yang H, Wang J, Dean M, Zhang Y, Liu S, Yang X, Fan J. Sun Y, et al. Among authors: dean m. Cell. 2021 Jan 21;184(2):404-421.e16. doi: 10.1016/j.cell.2020.11.041. Epub 2020 Dec 23. Cell. 2021. PMID: 33357445 Free article.

10

scDPN for High-throughput Single-cell CNV Detection to Uncover Clonal Evolution During HCC Recurrence.

Wu L, Jiang M, Wang Y, Zhou B, Sun Y, Zhou K, Xie J, Zhong Y, Zhao Z, Dean M, Hou Y, Liu S. Wu L, et al. Among authors: dean m. Genomics Proteomics Bioinformatics. 2021 Jun;19(3):346-357. doi: 10.1016/j.gpb.2021.03.008. Epub 2021 Jul 17. Genomics Proteomics Bioinformatics. 2021. PMID: 34280548 Free PMC article.

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