Cossio P - Search Results

1

Cardiolipin prevents pore formation in phosphatidylglycerol bacterial membrane models.

Rocha-Roa C, Orjuela JD, Leidy C, Cossio P, Aponte-Santamaría C. Rocha-Roa C, et al. Among authors: cossio p. FEBS Lett. 2021 Nov;595(21):2701-2714. doi: 10.1002/1873-3468.14206. Epub 2021 Oct 26. FEBS Lett. 2021. PMID: 34633077 Free article.

2

Transition Rates and Efficiency of Collective Variables from Time-Dependent Biased Simulations.

Palacio-Rodriguez K, Vroylandt H, Stelzl LS, Pietrucci F, Hummer G, Cossio P. Palacio-Rodriguez K, et al. Among authors: cossio p. J Phys Chem Lett. 2022 Aug 18;13(32):7490-7496. doi: 10.1021/acs.jpclett.2c01807. Epub 2022 Aug 8. J Phys Chem Lett. 2022. PMID: 35939819

3

Computational Evolution Protocol for Peptide Design.

Ochoa R, Soler MA, Gladich I, Battisti A, Minovski N, Rodriguez A, Fortuna S, Cossio P, Laio A. Ochoa R, et al. Among authors: cossio p. Methods Mol Biol. 2022;2405:335-359. doi: 10.1007/978-1-0716-1855-4_16. Methods Mol Biol. 2022. PMID: 35298821

4

Assessing the capability of in silico mutation protocols for predicting the finite temperature conformation of amino acids.

Ochoa R , Soler MA , Laio A , Cossio P . Ochoa R , et al. Among authors: cossio p. Phys Chem Chem Phys. 2018 Oct 17;20(40):25901-25909. doi: 10.1039/c8cp03826k. Phys Chem Chem Phys. 2018. PMID: 30289133

5

Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol.

Ochoa R, Lunardelli VAS, Rosa DS, Laio A, Cossio P. Ochoa R, et al. Among authors: cossio p. Front Immunol. 2022 Apr 27;13:862851. doi: 10.3389/fimmu.2022.862851. eCollection 2022. Front Immunol. 2022. PMID: 35572587 Free PMC article.

6

Conformations of the Huntingtin N-term in aqueous solution from atomistic simulations.

Rossetti G, Cossio P, Laio A, Carloni P. Rossetti G, et al. Among authors: cossio p. FEBS Lett. 2011 Oct 3;585(19):3086-9. doi: 10.1016/j.febslet.2011.08.036. Epub 2011 Aug 30. FEBS Lett. 2011. PMID: 21889504 Free article.

7

The Dimer-of-Trimers Assembly Prevents Catalysis at the Transferase Site of Prokaryotic FAD Synthase.

Lans I, Seco J, Serrano A, Burbano R, Cossio P, Daza MC, Medina M. Lans I, et al. Among authors: cossio p. Biophys J. 2018 Sep 18;115(6):988-995. doi: 10.1016/j.bpj.2018.08.011. Epub 2018 Aug 17. Biophys J. 2018. PMID: 30177440 Free PMC article.

8

Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations.

Ochoa R, Laio A, Cossio P. Ochoa R, et al. Among authors: cossio p. J Chem Inf Model. 2019 Aug 26;59(8):3464-3473. doi: 10.1021/acs.jcim.9b00403. Epub 2019 Jul 23. J Chem Inf Model. 2019. PMID: 31290667

9

Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles.

Lans I, Palacio-Rodríguez K, Cavasotto CN, Cossio P. Lans I, et al. Among authors: cossio p. J Comput Aided Mol Des. 2020 Oct;34(10):1063-1077. doi: 10.1007/s10822-020-00329-7. Epub 2020 Jul 12. J Comput Aided Mol Des. 2020. PMID: 32656619 Free PMC article.

10

In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target.

Lans I, Anoz-Carbonell E, Palacio-Rodríguez K, Aínsa JA, Medina M, Cossio P. Lans I, et al. Among authors: cossio p. PLoS Comput Biol. 2020 Aug 14;16(8):e1007898. doi: 10.1371/journal.pcbi.1007898. eCollection 2020 Aug. PLoS Comput Biol. 2020. PMID: 32797038 Free PMC article.

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