Rosikiewicz W - Search Results

1

DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation.

Liu Y, Rosikiewicz W, Pan Z, Jillette N, Wang P, Taghbalout A, Foox J, Mason C, Carroll M, Cheng A, Li S. Liu Y, et al. Among authors: rosikiewicz w. Genome Biol. 2021 Oct 18;22(1):295. doi: 10.1186/s13059-021-02510-z. Genome Biol. 2021. PMID: 34663425 Free PMC article.

2

Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways.

Taghbalout A, Du M, Jillette N, Rosikiewicz W, Rath A, Heinen CD, Li S, Cheng AW. Taghbalout A, et al. Among authors: rosikiewicz w. Nat Commun. 2019 Sep 20;10(1):4296. doi: 10.1038/s41467-019-12339-7. Nat Commun. 2019. PMID: 31541098 Free PMC article.

3

Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data.

Ashoor H, Chen X, Rosikiewicz W, Wang J, Cheng A, Wang P, Ruan Y, Li S. Ashoor H, et al. Among authors: rosikiewicz w. Nat Commun. 2020 Mar 3;11(1):1173. doi: 10.1038/s41467-020-14974-x. Nat Commun. 2020. PMID: 32127534 Free PMC article.

4

TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis.

Rosikiewicz W, Chen X, Dominguez PM, Ghamlouch H, Aoufouchi S, Bernard OA, Melnick A, Li S. Rosikiewicz W, et al. Sci Adv. 2020 Jun 17;6(25):eaay5872. doi: 10.1126/sciadv.aay5872. eCollection 2020 Jun. Sci Adv. 2020. PMID: 32596441 Free PMC article.

5

Acute depletion of CTCF rewires genome-wide chromatin accessibility.

Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Xu B, et al. Among authors: rosikiewicz w. Genome Biol. 2021 Aug 24;22(1):244. doi: 10.1186/s13059-021-02466-0. Genome Biol. 2021. PMID: 34429148 Free PMC article.

6

TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis.

Dominguez PM, Ghamlouch H, Rosikiewicz W, Kumar P, Béguelin W, Fontán L, Rivas MA, Pawlikowska P, Armand M, Mouly E, Torres-Martin M, Doane AS, Calvo Fernandez MT, Durant M, Della-Valle V, Teater M, Cimmino L, Droin N, Tadros S, Motanagh S, Shih AH, Rubin MA, Tam W, Aifantis I, Levine RL, Elemento O, Inghirami G, Green MR, Figueroa ME, Bernard OA, Aoufouchi S, Li S, Shaknovich R, Melnick AM. Dominguez PM, et al. Among authors: rosikiewicz w. Cancer Discov. 2018 Dec;8(12):1632-1653. doi: 10.1158/2159-8290.CD-18-0657. Epub 2018 Oct 1. Cancer Discov. 2018. PMID: 30274972 Free PMC article.

7

PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands.

Wang X, Rosikiewicz W, Sedkov Y, Martinez T, Hansen BS, Schreiner P, Christensen J, Xu B, Pruett-Miller SM, Helin K, Herz HM. Wang X, et al. Among authors: rosikiewicz w. Life Sci Alliance. 2021 Oct 19;5(1):e202101228. doi: 10.26508/lsa.202101228. Print 2022 Jan. Life Sci Alliance. 2021. PMID: 34667079 Free PMC article.

8

Genomic profiling identifies genes and pathways dysregulated by HEY1-NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis.

Qi W, Rosikiewicz W, Yin Z, Xu B, Jiang H, Wan S, Fan Y, Wu G, Wang L. Qi W, et al. Among authors: rosikiewicz w. J Pathol. 2022 Aug;257(5):579-592. doi: 10.1002/path.5899. Epub 2022 Apr 26. J Pathol. 2022. PMID: 35342947 Free PMC article.

9

The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program.

Wang X, Rosikiewicz W, Sedkov Y, Mondal B, Martinez T, Kallappagoudar S, Tvardovskiy A, Bajpai R, Xu B, Pruett-Miller SM, Schneider R, Herz HM. Wang X, et al. Among authors: rosikiewicz w. Life Sci Alliance. 2022 Jul 12;5(11):e202201572. doi: 10.26508/lsa.202201572. Print 2022 Nov. Life Sci Alliance. 2022. PMID: 35820704 Free PMC article.

10

Promoter switching in response to changing environment and elevated expression of protein-coding genes overlapping at their 5' ends.

Rosikiewicz W, Sikora J, Skrzypczak T, Kubiak MR, Makałowska I. Rosikiewicz W, et al. Sci Rep. 2021 Apr 26;11(1):8984. doi: 10.1038/s41598-021-87970-w. Sci Rep. 2021. PMID: 33903630 Free PMC article.

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