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Challenges in evaluating the use of viral sequence data to identify HIV transmission networks for public health.
Kantor R, Fulton JP, Steingrimsson J, Novitsky V, Howison M, Gillani F, Li Y, Manne A, Parillo Z, Spence M, Marak T, Chan P, Dunn CW, Bertrand T, Bandy U, Alexander-Scott N, Hogan JW. Kantor R, et al. Among authors: dunn cw. Stat Commun Infect Dis. 2020 Sep;12(Suppl 1):20190019. doi: 10.1515/scid-2019-0019. Epub 2020 Nov 11. Stat Commun Infect Dis. 2020. PMID: 34733405 Free PMC article.
Agalma: an automated phylogenomics workflow.
Dunn CW, Howison M, Zapata F. Dunn CW, et al. BMC Bioinformatics. 2013 Nov 19;14:330. doi: 10.1186/1471-2105-14-330. BMC Bioinformatics. 2013. PMID: 24252138 Free PMC article.
An Integrated Perspective on Phylogenetic Workflows.
Guang A, Zapata F, Howison M, Lawrence CE, Dunn CW. Guang A, et al. Among authors: dunn cw. Trends Ecol Evol. 2016 Feb;31(2):116-126. doi: 10.1016/j.tree.2015.12.007. Epub 2016 Jan 5. Trends Ecol Evol. 2016. PMID: 26775796 Review.
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters.
Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Novitsky V, et al. Among authors: dunn cw. Sci Rep. 2020 Oct 29;10(1):18547. doi: 10.1038/s41598-020-75560-1. Sci Rep. 2020. PMID: 33122765 Free PMC article.
Revising transcriptome assemblies with phylogenetic information.
Guang A, Howison M, Zapata F, Lawrence C, Dunn CW. Guang A, et al. Among authors: dunn cw. PLoS One. 2021 Jan 12;16(1):e0244202. doi: 10.1371/journal.pone.0244202. eCollection 2021. PLoS One. 2021. PMID: 33434218 Free PMC article.
Longitudinal typing of molecular HIV clusters in a statewide epidemic.
Novitsky V, Steingrimsson J, Howison M, Dunn C, Gillani FS, Manne A, Li Y, Spence M, Parillo Z, Fulton J, Marak T, Chan P, Bertrand T, Bandy U, Alexander-Scott N, Hogan J, Kantor R. Novitsky V, et al. AIDS. 2021 Sep 1;35(11):1711-1722. doi: 10.1097/QAD.0000000000002953. AIDS. 2021. PMID: 34033589 Free PMC article.
116 results