Kim HJ - Search Results

1

Transcriptomic Analysis Identifies A Tolerogenic Dendritic Cell Signature.

Robertson H, Li J, Kim HJ, Rhodes JW, Harman AN, Patrick E, Rogers NM. Robertson H, et al. Among authors: kim hj. Front Immunol. 2021 Oct 20;12:733231. doi: 10.3389/fimmu.2021.733231. eCollection 2021. Front Immunol. 2021. PMID: 34745103 Free PMC article.

2

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning.

Kim HJ, Osteil P, Humphrey SJ, Cinghu S, Oldfield AJ, Patrick E, Wilkie EE, Peng G, Suo S, Jothi R, Tam PPL, Yang P. Kim HJ, et al. Nucleic Acids Res. 2020 Feb 28;48(4):1828-1842. doi: 10.1093/nar/gkz1179. Nucleic Acids Res. 2020. PMID: 31853542 Free PMC article.

3

Thinking process templates for constructing data stories with SCDNEY.

Cao Y, Tran A, Kim H, Robertson N, Lin Y, Torkel M, Yang P, Patrick E, Ghazanfar S, Yang J. Cao Y, et al. F1000Res. 2023 Dec 15;12:261. doi: 10.12688/f1000research.130623.1. eCollection 2023. F1000Res. 2023. PMID: 38434622 Free PMC article.

4

Decoding the hallmarks of allograft dysfunction with a comprehensive pan-organ transcriptomic atlas.

Robertson H, Kim HJ, Li J, Robertson N, Robertson P, Jimenez-Vera E, Ameen F, Tran A, Trinh K, O'Connell PJ, Yang JYH, Rogers NM, Patrick E. Robertson H, et al. Among authors: kim hj. Nat Med. 2024 Dec;30(12):3748-3757. doi: 10.1038/s41591-024-03030-6. Epub 2024 Jun 18. Nat Med. 2024. PMID: 38890530 Free PMC article.

5

CiteFuse enables multi-modal analysis of CITE-seq data.

Kim HJ, Lin Y, Geddes TA, Yang JYH, Yang P. Kim HJ, et al. Bioinformatics. 2020 Aug 15;36(14):4137-4143. doi: 10.1093/bioinformatics/btaa282. Bioinformatics. 2020. PMID: 32353146

6

Comprehensive characterization of fetal and mature retinal cell identity to assess the fidelity of retinal organoids.

Kim HJ, O'Hara-Wright M, Kim D, Loi TH, Lim BY, Jamieson RV, Gonzalez-Cordero A, Yang P. Kim HJ, et al. Among authors: kim d. Stem Cell Reports. 2023 Jan 10;18(1):175-189. doi: 10.1016/j.stemcr.2022.12.002. Stem Cell Reports. 2023. PMID: 36630901 Free PMC article.

7

Uncovering cell identity through differential stability with Cepo.

Kim HJ, Wang K, Chen C, Lin Y, Tam PPL, Lin DM, Yang JYH, Yang P. Kim HJ, et al. Nat Comput Sci. 2021 Dec;1(12):784-790. doi: 10.1038/s43588-021-00172-2. Epub 2021 Dec 20. Nat Comput Sci. 2021. PMID: 38217190

8

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.

Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang JYH. Lin Y, et al. Among authors: kim hj. Mol Syst Biol. 2020 Jun;16(6):e9389. doi: 10.15252/msb.20199389. Mol Syst Biol. 2020. PMID: 32567229 Free PMC article.

9

Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data.

Kim D, Tran A, Kim HJ, Lin Y, Yang JYH, Yang P. Kim D, et al. Among authors: kim hj. NPJ Syst Biol Appl. 2023 Oct 19;9(1):51. doi: 10.1038/s41540-023-00312-6. NPJ Syst Biol Appl. 2023. PMID: 37857632 Free PMC article. Review.

10

PhosR enables processing and functional analysis of phosphoproteomic data.

Kim HJ, Kim T, Hoffman NJ, Xiao D, James DE, Humphrey SJ, Yang P. Kim HJ, et al. Among authors: kim t. Cell Rep. 2021 Feb 23;34(8):108771. doi: 10.1016/j.celrep.2021.108771. Cell Rep. 2021. PMID: 33626354 Free article.

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