Dudoit S - Search Results

1

Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes.

Kinisu M, Choi YJ, Cattoglio C, Liu K, Roux de Bezieux H, Valbuena R, Pum N, Dudoit S, Huang H, Xuan Z, Kim SY, He L. Kinisu M, et al. Among authors: dudoit s. Cell Rep. 2021 Nov 9;37(6):109982. doi: 10.1016/j.celrep.2021.109982. Cell Rep. 2021. PMID: 34758315 Free PMC article.

2

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities.

Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Gadye L, et al. Among authors: dudoit s. Cell Stem Cell. 2017 Dec 7;21(6):775-790.e9. doi: 10.1016/j.stem.2017.10.014. Epub 2017 Nov 22. Cell Stem Cell. 2017. PMID: 29174333 Free PMC article.

3

Trajectory-based differential expression analysis for single-cell sequencing data.

Van den Berge K, Roux de Bézieux H, Street K, Saelens W, Cannoodt R, Saeys Y, Dudoit S, Clement L. Van den Berge K, et al. Among authors: dudoit s. Nat Commun. 2020 Mar 5;11(1):1201. doi: 10.1038/s41467-020-14766-3. Nat Commun. 2020. PMID: 32139671 Free PMC article.

4

CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS.

Roux de Bézieux H, Lima L, Perraudeau F, Mary A, Dudoit S, Jacob L. Roux de Bézieux H, et al. Among authors: dudoit s. Bioinformatics. 2022 Jun 24;38(Suppl 1):i36-i44. doi: 10.1093/bioinformatics/btac238. Bioinformatics. 2022. PMID: 35758804 Free PMC article.

5

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects.

Van den Berge K, Chou HJ, Roux de Bézieux H, Street K, Risso D, Ngai J, Dudoit S. Van den Berge K, et al. Among authors: dudoit s. Cell Rep Methods. 2022 Nov 1;2(11):100321. doi: 10.1016/j.crmeth.2022.100321. eCollection 2022 Nov 21. Cell Rep Methods. 2022. PMID: 36452861 Free PMC article.

6

Trajectory inference across multiple conditions with condiments.

Roux de Bézieux H, Van den Berge K, Street K, Dudoit S. Roux de Bézieux H, et al. Among authors: dudoit s. Nat Commun. 2024 Jan 27;15(1):833. doi: 10.1038/s41467-024-44823-0. Nat Commun. 2024. PMID: 38280860 Free PMC article.

7

Improving replicability in single-cell RNA-Seq cell type discovery with Dune.

Roux de Bézieux H, Street K, Fischer S, Van den Berge K, Chance R, Risso D, Gillis J, Ngai J, Purdom E, Dudoit S. Roux de Bézieux H, et al. Among authors: dudoit s. BMC Bioinformatics. 2024 May 24;25(1):198. doi: 10.1186/s12859-024-05814-6. BMC Bioinformatics. 2024. PMID: 38789920 Free PMC article.

8

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.

Fletcher RB, Das D, Gadye L, Street KN, Baudhuin A, Wagner A, Cole MB, Flores Q, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J. Fletcher RB, et al. Among authors: dudoit s. Cell Stem Cell. 2017 Jun 1;20(6):817-830.e8. doi: 10.1016/j.stem.2017.04.003. Epub 2017 May 11. Cell Stem Cell. 2017. PMID: 28506465 Free PMC article.

9

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.

Cole MB, Risso D, Wagner A, DeTomaso D, Ngai J, Purdom E, Dudoit S, Yosef N. Cole MB, et al. Among authors: dudoit s. Cell Syst. 2019 Apr 24;8(4):315-328.e8. doi: 10.1016/j.cels.2019.03.010. Cell Syst. 2019. PMID: 31022373 Free PMC article.

10

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

Street K, Risso D, Fletcher RB, Das D, Ngai J, Yosef N, Purdom E, Dudoit S. Street K, et al. Among authors: dudoit s. BMC Genomics. 2018 Jun 19;19(1):477. doi: 10.1186/s12864-018-4772-0. BMC Genomics. 2018. PMID: 29914354 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

80 results

Search Page

Filters