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Page 1
Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography.
Pandey S, Calvey G, Katz AM, Malla TN, Koua FHM, Martin-Garcia JM, Poudyal I, Yang JH, Vakili M, Yefanov O, Zielinski KA, Bajt S, Awel S, Doerner K, Frank M, Gelisio L, Jernigan R, Kirkwood H, Kloos M, Koliyadu J, Mariani V, Miller MD, Mills G, Nelson G, Olmos JL Jr, Sadri A, Sato T, Tolstikova A, Xu W, Ourmazd A, Spence JCH, Schwander P, Barty A, Chapman HN, Fromme P, Mancuso AP, Phillips GN Jr, Bean R, Pollack L, Schmidt M. Pandey S, et al. Among authors: vakili m. IUCrJ. 2021 Sep 9;8(Pt 6):878-895. doi: 10.1107/S2052252521008125. eCollection 2021 Nov 1. IUCrJ. 2021. PMID: 34804542 Free PMC article.
Data reduction for serial crystallography using a robust peak finder.
Hadian-Jazi M, Sadri A, Barty A, Yefanov O, Galchenkova M, Oberthuer D, Komadina D, Brehm W, Kirkwood H, Mills G, de Wijn R, Letrun R, Kloos M, Vakili M, Gelisio L, Darmanin C, Mancuso AP, Chapman HN, Abbey B. Hadian-Jazi M, et al. Among authors: vakili m. J Appl Crystallogr. 2021 Sep 13;54(Pt 5):1360-1378. doi: 10.1107/S1600576721007317. eCollection 2021 Oct 1. J Appl Crystallogr. 2021. PMID: 34667447 Free PMC article.
Co-flow injection for serial crystallography at X-ray free-electron lasers.
Doppler D, Rabbani MT, Letrun R, Cruz Villarreal J, Kim DH, Gandhi S, Egatz-Gomez A, Sonker M, Chen J, Koua FHM, Yang J, Youssef M, Mazalova V, Bajt S, Shelby ML, Coleman MA, Wiedorn MO, Knoska J, Schön S, Sato T, Hunter MS, Hosseinizadeh A, Kuptiz C, Nazari R, Alvarez RC, Karpos K, Zaare S, Dobson Z, Discianno E, Zhang S, Zook JD, Bielecki J, de Wijn R, Round AR, Vagovic P, Kloos M, Vakili M, Ketawala GK, Stander NE, Olson TL, Morin K, Mondal J, Nguyen J, Meza-Aguilar JD, Kodis G, Vaiana S, Martin-Garcia JM, Mariani V, Schwander P, Schmidt M, Messerschmidt M, Ourmazd A, Zatsepin N, Weierstall U, Bruce BD, Mancuso AP, Grant T, Barty A, Chapman HN, Frank M, Fromme R, Spence JCH, Botha S, Fromme P, Kirian RA, Ros A. Doppler D, et al. Among authors: vakili m. J Appl Crystallogr. 2022 Feb 1;55(Pt 1):1-13. doi: 10.1107/S1600576721011079. eCollection 2022 Feb 1. J Appl Crystallogr. 2022. PMID: 35153640 Free PMC article.
3D printed devices and infrastructure for liquid sample delivery at the European XFEL.
Vakili M, Bielecki J, Knoška J, Otte F, Han H, Kloos M, Schubert R, Delmas E, Mills G, de Wijn R, Letrun R, Dold S, Bean R, Round A, Kim Y, Lima FA, Dörner K, Valerio J, Heymann M, Mancuso AP, Schulz J. Vakili M, et al. J Synchrotron Radiat. 2022 Mar 1;29(Pt 2):331-346. doi: 10.1107/S1600577521013370. Epub 2022 Feb 15. J Synchrotron Radiat. 2022. PMID: 35254295 Free PMC article.
A multi-million image Serial Femtosecond Crystallography dataset collected at the European XFEL.
Kirkwood HJ, de Wijn R, Mills G, Letrun R, Kloos M, Vakili M, Karnevskiy M, Ahmed K, Bean RJ, Bielecki J, Dall'Antonia F, Kim Y, Kim C, Koliyadu J, Round A, Sato T, Sikorski M, Vagovič P, Sztuk-Dambietz J, Mancuso AP. Kirkwood HJ, et al. Among authors: vakili m. Sci Data. 2022 Apr 12;9(1):161. doi: 10.1038/s41597-022-01266-w. Sci Data. 2022. PMID: 35414146 Free PMC article.
Towards real-time analysis of liquid jet alignment in serial femtosecond crystallography.
Patel J, Round A, Bielecki J, Doerner K, Kirkwood H, Letrun R, Schulz J, Sikorski M, Vakili M, de Wijn R, Peele A, Mancuso AP, Ab Bey B. Patel J, et al. Among authors: vakili m. J Appl Crystallogr. 2022 Aug 1;55(Pt 4):944-952. doi: 10.1107/S1600576722005891. eCollection 2022 Aug 1. J Appl Crystallogr. 2022. PMID: 35974719 Free PMC article.
Automatic bad-pixel mask maker for X-ray pixel detectors with application to serial crystallography.
Sadri A, Hadian-Jazi M, Yefanov O, Galchenkova M, Kirkwood H, Mills G, Sikorski M, Letrun R, de Wijn R, Vakili M, Oberthuer D, Komadina D, Brehm W, Mancuso AP, Carnis J, Gelisio L, Chapman HN. Sadri A, et al. Among authors: vakili m. J Appl Crystallogr. 2022 Nov 21;55(Pt 6):1549-1561. doi: 10.1107/S1600576722009815. eCollection 2022 Dec 1. J Appl Crystallogr. 2022. PMID: 36570663 Free PMC article.
XFEL Microcrystallography of Self-Assembling Silver n-Alkanethiolates.
Aleksich M, Paley DW, Schriber EA, Linthicum W, Oklejas V, Mittan-Moreau DW, Kelly RP, Kotei PA, Ghodsi A, Sierra RG, Aquila A, Poitevin F, Blaschke JP, Vakili M, Milne CJ, Dall'Antonia F, Khakhulin D, Ardana-Lamas F, Lima F, Valerio J, Han H, Gallo T, Yousef H, Turkot O, Bermudez Macias IJ, Kluyver T, Schmidt P, Gelisio L, Round AR, Jiang Y, Vinci D, Uemura Y, Kloos M, Hunter M, Mancuso AP, Huey BD, Parent LR, Sauter NK, Brewster AS, Hohman JN. Aleksich M, et al. Among authors: vakili m. J Am Chem Soc. 2023 Aug 9;145(31):17042-17055. doi: 10.1021/jacs.3c02183. Epub 2023 Jul 31. J Am Chem Soc. 2023. PMID: 37524069
Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography.
Vakili M, Han H, Schmidt C, Wrona A, Kloos M, de Diego I, Dörner K, Geng T, Kim C, Koua FHM, Melo DVM, Rappas M, Round A, Round E, Sikorski M, Valerio J, Zhou T, Lorenzen K, Schulz J. Vakili M, et al. J Appl Crystallogr. 2023 Jun 12;56(Pt 4):1038-1045. doi: 10.1107/S1600576723004405. eCollection 2023 Aug 1. J Appl Crystallogr. 2023. PMID: 37555221 Free PMC article.
Experimental capabilities for liquid jet samples at sub-MHz rates at the FXE Instrument at European XFEL.
Lima FA, Otte F, Vakili M, Ardana-Lamas F, Biednov M, Dall'Antonia F, Frankenberger P, Gawelda W, Gelisio L, Han H, Huang X, Jiang Y, Kloos M, Kluyver T, Knoll M, Kubicek K, Bermudez Macias IJ, Schulz J, Turkot O, Uemura Y, Valerio J, Wang H, Yousef H, Zalden P, Khakhulin D, Bressler C, Milne C. Lima FA, et al. Among authors: vakili m. J Synchrotron Radiat. 2023 Nov 1;30(Pt 6):1168-1182. doi: 10.1107/S1600577523008159. Epub 2023 Oct 20. J Synchrotron Radiat. 2023. PMID: 37860937 Free PMC article.
269 results