Sun Y - Search Results

1

Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning.

Shang J, Sun Y. Shang J, et al. Among authors: sun y. BMC Biol. 2021 Nov 24;19(1):250. doi: 10.1186/s12915-021-01180-4. BMC Biol. 2021. PMID: 34819064 Free PMC article.

2

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data.

Chen J, Huang J, Sun Y. Chen J, et al. Among authors: sun y. BMC Bioinformatics. 2019 Jun 4;20(1):305. doi: 10.1186/s12859-019-2878-2. BMC Bioinformatics. 2019. PMID: 31164077 Free PMC article.

3

A binning tool to reconstruct viral haplotypes from assembled contigs.

Chen J, Shang J, Wang J, Sun Y. Chen J, et al. Among authors: sun y. BMC Bioinformatics. 2019 Nov 4;20(1):544. doi: 10.1186/s12859-019-3138-1. BMC Bioinformatics. 2019. PMID: 31684876 Free PMC article.

4

CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning.

Shang J, Sun Y. Shang J, et al. Among authors: sun y. Methods. 2021 May;189:95-103. doi: 10.1016/j.ymeth.2020.05.018. Epub 2020 May 23. Methods. 2021. PMID: 32454212 Free PMC article.

5

Improving protein domain classification for third-generation sequencing reads using deep learning.

Du N, Shang J, Sun Y. Du N, et al. Among authors: sun y. BMC Genomics. 2021 Apr 9;22(1):251. doi: 10.1186/s12864-021-07468-7. BMC Genomics. 2021. PMID: 33836667 Free PMC article.

6

Bacteriophage classification for assembled contigs using graph convolutional network.

Shang J, Jiang J, Sun Y. Shang J, et al. Among authors: sun y. Bioinformatics. 2021 Jul 12;37(Suppl_1):i25-i33. doi: 10.1093/bioinformatics/btab293. Bioinformatics. 2021. PMID: 34252923 Free PMC article.

7

VirStrain: a strain identification tool for RNA viruses.

Liao H, Cai D, Sun Y. Liao H, et al. Among authors: sun y. Genome Biol. 2022 Jan 31;23(1):38. doi: 10.1186/s13059-022-02609-x. Genome Biol. 2022. PMID: 35101081 Free PMC article.

8

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data.

Tang X, Shang J, Sun Y. Tang X, et al. Among authors: sun y. Brief Bioinform. 2022 Mar 10;23(2):bbac011. doi: 10.1093/bib/bbac011. Brief Bioinform. 2022. PMID: 35136930 Free PMC article.

9

CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.

Shang J, Sun Y. Shang J, et al. Among authors: sun y. Brief Bioinform. 2022 Sep 20;23(5):bbac182. doi: 10.1093/bib/bbac182. Brief Bioinform. 2022. PMID: 35595715 Free PMC article.

10

Accurate identification of bacteriophages from metagenomic data using Transformer.

Shang J, Tang X, Guo R, Sun Y. Shang J, et al. Among authors: sun y. Brief Bioinform. 2022 Jul 18;23(4):bbac258. doi: 10.1093/bib/bbac258. Brief Bioinform. 2022. PMID: 35769000 Free PMC article.

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