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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.
Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA Jr, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, Wang M. Petras D, et al. Among authors: allen ae. Nat Methods. 2022 Feb;19(2):134-136. doi: 10.1038/s41592-021-01339-5. Nat Methods. 2022. PMID: 34862502 Free PMC article. No abstract available.
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.
Koester I, Quinlan ZA, Nothias LF, White ME, Rabines A, Petras D, Brunson JK, Dührkop K, Ludwig M, Böcker S, Azam F, Allen AE, Dorrestein PC, Aluwihare LI. Koester I, et al. Among authors: allen ae. Environ Microbiol. 2022 Nov;24(11):5408-5424. doi: 10.1111/1462-2920.16242. Environ Microbiol. 2022. PMID: 36222155 Free PMC article.
Molecular forecasting of domoic acid during a pervasive toxic diatom bloom.
Brunson JK, Thukral M, Ryan JP, Anderson CR, Kolody BC, James CC, Chavez FP, Leaw CP, Rabines AJ, Venepally P, Fussy Z, Zheng H, Kudela RM, Smith GJ, Moore BS, Allen AE. Brunson JK, et al. Among authors: allen ae. Proc Natl Acad Sci U S A. 2024 Oct;121(40):e2319177121. doi: 10.1073/pnas.2319177121. Epub 2024 Sep 19. Proc Natl Acad Sci U S A. 2024. PMID: 39298472 Free PMC article.
Genomic and functional adaptation in surface ocean planktonic prokaryotes.
Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC. Yooseph S, et al. Among authors: allen ae. Nature. 2010 Nov 4;468(7320):60-6. doi: 10.1038/nature09530. Nature. 2010. PMID: 21048761
Pan genome of the phytoplankton Emiliania underpins its global distribution.
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium; Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV. Read BA, et al. Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12. Nature. 2013. PMID: 23760476 Free article.
Designer diatom episomes delivered by bacterial conjugation.
Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD. Karas BJ, et al. Among authors: allen ae. Nat Commun. 2015 Apr 21;6:6925. doi: 10.1038/ncomms7925. Nat Commun. 2015. PMID: 25897682 Free PMC article.
221 results