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Page 1
Genomic and Synthetic Biology Digital Biosecurity.
Hudson CM, Pattengale ND, Iyer RK, Kalbarczyk ZT, Alli N. Hudson CM, et al. Among authors: pattengale nd. Pac Symp Biocomput. 2022;27:402-406. Pac Symp Biocomput. 2022. PMID: 34890167 Free article.
Uncovering hidden phylogenetic consensus in large data sets.
Pattengale ND, Aberer AJ, Swenson KM, Stamatakis A, Moret BM. Pattengale ND, et al. IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):902-11. doi: 10.1109/TCBB.2011.28. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21301032
Efficiently computing the Robinson-Foulds metric.
Pattengale ND, Gottlieb EJ, Moret BM. Pattengale ND, et al. J Comput Biol. 2007 Jul-Aug;14(6):724-35. doi: 10.1089/cmb.2007.R012. J Comput Biol. 2007. PMID: 17691890
The Kernel of Maximum Agreement Subtrees.
Swenson KM, Chen E, Pattengale ND, Sankoff D. Swenson KM, et al. Among authors: pattengale nd. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1023-31. doi: 10.1109/TCBB.2012.11. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22231622
How many bootstrap replicates are necessary?
Pattengale ND, Alipour M, Bininda-Emonds OR, Moret BM, Stamatakis A. Pattengale ND, et al. J Comput Biol. 2010 Mar;17(3):337-54. doi: 10.1089/cmb.2009.0179. J Comput Biol. 2010. PMID: 20377449