Arredondo-Alonso S - Search Results

1

A high-throughput multiplexing and selection strategy to complete bacterial genomes.

Arredondo-Alonso S, Pöntinen AK, Cléon F, Gladstone RA, Schürch AC, Johnsen PJ, Samuelsen Ø, Corander J. Arredondo-Alonso S, et al. Gigascience. 2021 Dec 9;10(12):giab079. doi: 10.1093/gigascience/giab079. Gigascience. 2021. PMID: 34891160 Free PMC article.

2

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data.

Arredondo-Alonso S, Willems RJ, van Schaik W, Schürch AC. Arredondo-Alonso S, et al. Microb Genom. 2017 Aug 18;3(10):e000128. doi: 10.1099/mgen.0.000128. eCollection 2017 Oct. Microb Genom. 2017. PMID: 29177087 Free PMC article.

3

Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches.

Schürch AC, Arredondo-Alonso S, Willems RJL, Goering RV. Schürch AC, et al. Clin Microbiol Infect. 2018 Apr;24(4):350-354. doi: 10.1016/j.cmi.2017.12.016. Epub 2018 Jan 5. Clin Microbiol Infect. 2018. PMID: 29309930 Free article. Review.

4

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.

Arredondo-Alonso S, Rogers MRC, Braat JC, Verschuuren TD, Top J, Corander J, Willems RJL, Schürch AC. Arredondo-Alonso S, et al. Microb Genom. 2018 Nov;4(11):e000224. doi: 10.1099/mgen.0.000224. Epub 2018 Nov 1. Microb Genom. 2018. PMID: 30383524 Free PMC article.

5

Corrigendum: mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.

Arredondo-Alonso S, Rogers MRC, Braat JC, Verschuuren TD, Top J, Corander J, Willems RJL, Schürch AC. Arredondo-Alonso S, et al. Microb Genom. 2019 Jan;5(1):e000249. doi: 10.1099/mgen.0.000249. Microb Genom. 2019. PMID: 30714567 Free PMC article. No abstract available.

6

Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium.

Arredondo-Alonso S, Top J, McNally A, Puranen S, Pesonen M, Pensar J, Marttinen P, Braat JC, Rogers MRC, van Schaik W, Kaski S, Willems RJL, Corander J, Schürch AC. Arredondo-Alonso S, et al. mBio. 2020 Feb 11;11(1):e03284-19. doi: 10.1128/mBio.03284-19. mBio. 2020. PMID: 32047136 Free PMC article.

7

gplas: a comprehensive tool for plasmid analysis using short-read graphs.

Arredondo-Alonso S, Bootsma M, Hein Y, Rogers MRC, Corander J, Willems RJL, Schürch AC. Arredondo-Alonso S, et al. Bioinformatics. 2020 Jun 1;36(12):3874-3876. doi: 10.1093/bioinformatics/btaa233. Bioinformatics. 2020. PMID: 32271863 Free PMC article.

8

Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium.

Top J, Arredondo-Alonso S, Schürch AC, Puranen S, Pesonen M, Pensar J, Willems RJL, Corander J. Top J, et al. Microb Genom. 2020 Dec;6(12):mgen000488. doi: 10.1099/mgen.0.000488. Epub 2020 Nov 30. Microb Genom. 2020. PMID: 33253085 Free PMC article.

9

Comparative genomics of ESBL-producing Escherichia coli (ESBL-Ec) reveals a similar distribution of the 10 most prevalent ESBL-Ec clones and ESBL genes among human community faecal and extra-intestinal infection isolates in the Netherlands (2014-17).

Verschuuren TD, van Hout D, Arredondo-Alonso S, Fluit AC, Reuland EA, Top J, Schürch AC, Bosch T, Bonten MJM, Kluytmans JAJW, Willems RJL. Verschuuren TD, et al. J Antimicrob Chemother. 2021 Mar 12;76(4):901-908. doi: 10.1093/jac/dkaa534. J Antimicrob Chemother. 2021. PMID: 33428729 Free PMC article.

10

Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals.

Arredondo-Alonso S, Top J, Corander J, Willems RJL, Schürch AC. Arredondo-Alonso S, et al. Genome Med. 2021 Jan 20;13(1):9. doi: 10.1186/s13073-020-00825-3. Genome Med. 2021. PMID: 33472670 Free PMC article.

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