Shields DC - Search Results

1

Computational modelling of chromosomally clustering protein domains in bacteria.

Cotroneo CE, Gormley IC, Shields DC, Salter-Townshend M. Cotroneo CE, et al. Among authors: shields dc. BMC Bioinformatics. 2021 Dec 14;22(1):593. doi: 10.1186/s12859-021-04512-x. BMC Bioinformatics. 2021. PMID: 34906073 Free PMC article.

2

GASP: Gapped Ancestral Sequence Prediction for proteins.

Edwards RJ, Shields DC. Edwards RJ, et al. Among authors: shields dc. BMC Bioinformatics. 2004 Sep 6;5:123. doi: 10.1186/1471-2105-5-123. BMC Bioinformatics. 2004. PMID: 15350199 Free PMC article.

3

Optimal stepwise experimental design for pairwise functional interaction studies.

Casey FP, Cagney G, Krogan NJ, Shields DC. Casey FP, et al. Among authors: shields dc. Bioinformatics. 2008 Dec 1;24(23):2733-9. doi: 10.1093/bioinformatics/btn472. Epub 2008 Sep 18. Bioinformatics. 2008. PMID: 18805797 Free PMC article.

4

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.

Davey NE, Edwards RJ, Shields DC. Davey NE, et al. Among authors: shields dc. BMC Bioinformatics. 2010 Jan 7;11:14. doi: 10.1186/1471-2105-11-14. BMC Bioinformatics. 2010. PMID: 20055997 Free PMC article.

5

Profile-based short linear protein motif discovery.

Haslam NJ, Shields DC. Haslam NJ, et al. Among authors: shields dc. BMC Bioinformatics. 2012 May 18;13:104. doi: 10.1186/1471-2105-13-104. BMC Bioinformatics. 2012. PMID: 22607209 Free PMC article.

6

SLiMScape: a protein short linear motif analysis plugin for Cytoscape.

O'Brien KT, Haslam NJ, Shields DC. O'Brien KT, et al. Among authors: shields dc. BMC Bioinformatics. 2013 Jul 15;14:224. doi: 10.1186/1471-2105-14-224. BMC Bioinformatics. 2013. PMID: 23855714 Free PMC article.

7

Computational survey of peptides derived from disulphide-bonded protein loops that may serve as mediators of protein-protein interactions.

Duffy FJ, Devocelle M, Croucher DR, Shields DC. Duffy FJ, et al. Among authors: shields dc. BMC Bioinformatics. 2014 Sep 17;15(1):305. doi: 10.1186/1471-2105-15-305. BMC Bioinformatics. 2014. PMID: 25231912 Free PMC article.

8

Insights into the production and evolution of lantibiotics from a computational analysis of peptides associated with the lanthipeptide cyclase domain.

Maheshwari N, Jermiin LS, Cotroneo C, Gordon SV, Shields DC. Maheshwari N, et al. Among authors: shields dc. R Soc Open Sci. 2024 Jul 17;11(7):240491. doi: 10.1098/rsos.240491. eCollection 2024 Jul. R Soc Open Sci. 2024. PMID: 39021782 Free PMC article.

9

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.

Davey NE, Shields DC, Edwards RJ. Davey NE, et al. Among authors: shields dc. Bioinformatics. 2009 Feb 15;25(4):443-50. doi: 10.1093/bioinformatics/btn664. Epub 2009 Jan 9. Bioinformatics. 2009. PMID: 19136552

10

Peptide-binding domains: are limp handshakes safest?

Haslam NJ, Shields DC. Haslam NJ, et al. Among authors: shields dc. Sci Signal. 2012 Sep 25;5(243):pe40. doi: 10.1126/scisignal.2003372. Sci Signal. 2012. PMID: 23012652

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